Association between ohylum and genus on microbiome data sets.
0
0
Entering edit mode
Edmond • 0
@38410c81
Last seen 22 months ago
Ecuador

Hello,

I have 233 genera on one matrix with 46 subjects, and on the same subjects (46), I have like 20 phyla. So, my question, is how can I associate these two matrices of the same subjects and same bacterias just classified by their taxa

I know methods like MDS, or by distances, but is there something else?

Or should I rely on alpha diversity similarities and based on the distances, classify ?

NOTE: I only have the abundance matrices for both the genera and the phylum. I do not have the sequences

phyloseq • 631 views
ADD COMMENT

Login before adding your answer.

Traffic: 479 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6