DiffBind: dba.plotPCA() ellipse
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Lisa • 0
@8ea577ce
Last seen 2.3 years ago
Italy

Hello! I am performing a differential analysis on ATAC-seq data in DiffBind. I would like to know if it is possible to plot ellipses around a PCA plot. I generated my plots with the following code:

dba.plotPCA(ATAC,DBA_REPLICATE,label=DBA_TISSUE,
        vColors = c("#E69F00","#33CC00", "#0099FF") , labelSize = 0.5 , dotSize = 0.7)

Is there any option that I can add?

PrincipalComponent DiffBind • 1.1k views
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If you use ggplot2 to make your plot, there is a stat.ellipse function you can add on.

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