I am new regarding the KEGG pathway enrichment analysis. I have an in-house assembled genome and used it for RNAseq analysis. I did KEGG annotation using GhostKOALA and then used the KO annotation for GSEA analysis using ClusterProfiler (version 4.4.4). It ran smoothly but the enrichment result was a list of KO entries. I guess it makes sense since I used this KO annotation as the TERM2GENE input (KO used as the term). However, what I am interested in is enriched KEGG pathways and their interactions. Any suggestions on how to get that? Do I need to use KEGG mapped pathway code as the term used in TERM2GENE? I used KEGG mapper to reconstruct the pathway based on the KO annotation, but haven't found a way on transforming the on-line result from https://www.genome.jp/kegg/mapper/reconstruct.html into the TERM2GENE format. Any suggestions would be greatly appreciated.