I/O Error in install 'EnsDb.Hsapiens.v75' on a CentOS platform
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@0d6f35a8
Last seen 22 months ago
Japan

Hello Everyone!

I'm recently tring to install the Packages EnsDb.Hsapiens.v75 on the CentOS 7.9 HPC system of our lab. So I try to install it in a conda env R4.1.3 and R4.2 by using:

BiocManager::install('EnsDb.Hsapiens.v75')

But it turns out error like this:

Bioconductor version 3.14 (BiocManager 1.30.18), R 4.1.3 (2022-03-10)
Installing package(s) 'EnsDb.Hsapiens.v75'
trying URL 'https://bioconductor.org/packages/3.14/data/annotation/src/contrib/EnsDb.Hsapiens.v75_2.99.0.tar.gz'
Content type 'application/octet-stream' length 79029669 bytes (75.4 MB)
==================================================
downloaded 75.4 MB

* installing *source* package ‘EnsDb.Hsapiens.v75’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
Warning: Couldn't set synchronous mode: disk I/O error
Use `synchronous` = NULL to turn off this warning.
Error: package or namespace load failed for 'EnsDb.Hsapiens.v75':
 .onLoad failed in loadNamespace() for 'EnsDb.Hsapiens.v75', details:
  call: NULL
  error: disk I/O error
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/home/jinhang/miniconda3/envs/SCENIC/lib/R/library/EnsDb.Hsapiens.v75’

And that error didn't occur on my Windows Labtop.

I'm really confusing on that error, especially the I/O error part. Does anyone know how to solve this problem?

Thanks!

EnsDb.Hsapiens.v75 • 593 views
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