I came across your null ranges function. Kindly address my doubts.
I have a small RNA loci data and i want to test the association with other genomic feature. I want to generate bootstrapped data for my small RNA loci. One way of doing is to perform subsampling and another way is using bootRanges.
gr1 is my granges data representing my small RNA loci. I want to bootstrap only these regions because other regions are not small RNA loci. Therefore, i added the background genome coordinates to the exclude option (gr_toexclude). Is it right?
How do i select block length??? If you say i can share my loci data so that you can help me in deciding the block length.
p1 = bootRanges(gr1,