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I just updated R, RStudio and Bioconductor (sessionInfo at the end). I reinstalled DESeq2 with no error messages. But I cannot load it.
Thanks.
library(DESeq2)
Error: package or namespace load failed for ‘DESeq2’ in dyn.load(file, DLLpath = DLLpath, ...):
unable to load shared object '/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/DESeq2/libs/DESeq2.so':
dlopen(/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/DESeq2/libs/DESeq2.so, 6): Symbol not found: __ZNKSt3__115basic_stringbufIcNS_11char_traitsIcEENS_9allocatorIcEEE3strEv
Referenced from: /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/DESeq2/libs/DESeq2.so (which was built for Mac OS X 13.0)
Expected in: /usr/lib/libc++.1.dylib
sessionInfo()
R version 4.2.2 (2022-10-31)
Platform: aarch64-apple-darwin20 (64-bit)
Running under: macOS Big Sur 11.6.5
Matrix products: default
LAPACK: /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats4 stats graphics grDevices utils
[6] datasets methods base
other attached packages:
[1] SummarizedExperiment_1.28.0 Biobase_2.58.0
[3] MatrixGenerics_1.10.0 matrixStats_0.63.0
[5] GenomicRanges_1.50.2 GenomeInfoDb_1.34.9
[7] IRanges_2.32.0 S4Vectors_0.36.2
[9] BiocGenerics_0.44.0
loaded via a namespace (and not attached):
[1] KEGGREST_1.38.0 locfit_1.5-9.7
[3] lattice_0.20-45 colorspace_2.1-0
[5] vctrs_0.5.2 utf8_1.2.3
[7] blob_1.2.3 XML_3.99-0.13
[9] rlang_1.0.6 pillar_1.8.1
[11] glue_1.6.2 DBI_1.1.3
[13] BiocParallel_1.32.5 bit64_4.0.5
[15] RColorBrewer_1.1-3 GenomeInfoDbData_1.2.9
[17] lifecycle_1.0.3 zlibbioc_1.44.0
[19] Biostrings_2.66.0 munsell_0.5.0
[21] gtable_0.3.1 codetools_0.2-19
[23] memoise_2.0.1 geneplotter_1.76.0
[25] fastmap_1.1.1 parallel_4.2.2
[27] AnnotationDbi_1.60.0 fansi_1.0.4
[29] Rcpp_1.0.10 xtable_1.8-4
[31] BiocManager_1.30.20 scales_1.2.1
[33] cachem_1.0.7 DelayedArray_0.24.0
[35] annotate_1.76.0 XVector_0.38.0
[37] bit_4.0.5 ggplot2_3.4.1
[39] png_0.1-8 grid_4.2.2
[41] cli_3.6.0 tools_4.2.2
[43] bitops_1.0-7 magrittr_2.0.3
[45] RCurl_1.98-1.10 RSQLite_2.3.0
[47] tibble_3.2.0 pkgconfig_2.0.3
[49] crayon_1.5.2 Matrix_1.5-3
[51] httr_1.4.5 R6_2.5.1
[53] compiler_4.2.2