I performed enrichment analysis for ChIP-seq data and I am required from my project to provide first IgG plots comparing IgG control signal with the signal from my sample to show there is enrichment. I was wondering if there is a way to extract such data for specific windows at some point in the analysis. I am asking as I never used DiffBind before and I do not know at which point such control samples are used in the analysis.

Thanks in advance!