Hi Everyone! I wanted to ask a question regarding the correct method for comparing two sample types that have different controls.
Condition | Treatment Time (0mins) | Treatment Time (20mins) | Treatment Time (120mins) |
---|---|---|---|
A | A:0mins | A:20mins | A:120mins |
B | B:0mins | B:20mins | B:120mins |
C | C:0mins | C:20mins | C:120mins |
In essence within DESeq2, I want to get the results of C:120vsC0mins against B20minsvsB0mins.
Has anyone performed this previously? If so, how did you relevel, form new factors and specify the results?
Cheers in advance