Hi all,
For the past month the gradient colors of the Dotplot following EnrichGO (clusterProfiler) have changed. Instead of bright red to blue/purple, its pale red/ orange and strange blue.
I didn't change the code, just using the standard dotplot(ego2, color="p.adjust") How can I fix it and return to the older bright colors.
Thanks
Set the colors first.
options(enrichplot.colours = c("red","blue"))
dotplot(ego2)
A more detailed explanation has been posted on the GitHub of clusterProfiler: https://github.com/YuLab-SMU/enrichplot/issues/268
Also these threads/posts may be of relevance: https://github.com/YuLab-SMU/clusterProfiler/issues/667#issuecomment-1953867201 (refers also to color scale in cnetplot (enrichplot) is not centered in 0, skewed towards positive values).
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version 2.3.6
Amazing :) It worked. Thank you!
I would like to ask how to make the counts legend black. Thank you.
You could look at my answer and extrapolate from there.
Dear James, I am faced with the same issue as above, i.e. a black line round the dots and lack of black fill in the count-circles. I have searched for an answer and read the enrichplot package description, but I am unable to find the list of parameters I can change using your suggestions, nor have I been able to extrapolate from your example. Any chance you could provide some additional assistance? Thanks.
facing same issue here... cannot change the dotplot color legend from black to white.. any help ion this?