Clsuter Profiler "counts"
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mpluchs • 0
Last seen 8 weeks ago
United States

Hello, I just had a quick question about what "counts" is in ClusterProfiler. I am doing a project looking at functional enrichment of gene sets, and getting a graphical output using GSEA. I am just not sure what "counts" means in the graph that we get as a result. Here is an example of the graph we get. Thanks! Graph showing clusters of genes that are functionally enriched, Counts are on the x-axis

enrich clusterProfiler • 178 views
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Last seen 3 minutes ago
United States

It's the count of significant genes in a given gene set. You can also use 'GeneRatio', which is the count/total number in set.

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