Clsuter Profiler "counts"
1
0
Entering edit mode
mpluchs • 0
@f3facd83
Last seen 8 weeks ago
United States

Hello, I just had a quick question about what "counts" is in ClusterProfiler. I am doing a project looking at functional enrichment of gene sets, and getting a graphical output using GSEA. I am just not sure what "counts" means in the graph that we get as a result. Here is an example of the graph we get. Thanks! Graph showing clusters of genes that are functionally enriched, Counts are on the x-axis

enrich clusterProfiler • 178 views
ADD COMMENT
1
Entering edit mode
@james-w-macdonald-5106
Last seen 3 minutes ago
United States

It's the count of significant genes in a given gene set. You can also use 'GeneRatio', which is the count/total number in set.

Login before adding your answer.

Traffic: 678 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6