I am a newer to use Bioconductor; I have met the following question when I load data by WTChimeraData() function This is my codes:
library(MouseGastrulationData)
sce.chimera <- WTChimeraData(samples=5:10)
sometimes, returned this
sce.chimera <- WTChimeraData(samples=5:10) |======================================================================| 100%
Error in curl::curl_fetch_memory(url, handle = handle) : Timeout was reached: [experimenthub.bioconductor.org] Connection time-out
and sometimes, returned this
Error in value[3L] : failed to connect reason: Timeout was reached: [bioconductor.org] Connection time-out Consider rerunning with 'localHub=TRUE' In addition: Warning message: Could not check database for updates. Database source currently unreachable. This should only be a temporary interruption. Using previously cached version.
I don't know why, who can help me? and thank you !
I tried to connect the Bioconductor servers for several times, and failed. So I decided to use the argument >localHub=True. I wonder to know how to download the data by myself.
The processed data _might_ be on ArrayExpress, I can't remember.
I would strongly recommend you download the data from a network that isn't blocking access. I was able to download these data at the weekend when I tried. You could then save the data as an rds file and transfer it onto the machine that you are struggling with.
Unfortunately I'm not going to be able to help further on this as the underlying issue is with the network connection you have.
Thank you very much for your advice. But, I install Biocondutor in Windows, network is fine, still cann't download data.