error from library(IlluminaHumanMethylationMSAmanifest)
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Entering edit mode
@zwang072005-11202
Last seen 3 months ago
United States

Error from using library(IlluminaHumanMethylationMSAmanifest)

#library(minfi)
#library(IlluminaHumanMethylationMSAmanifest)
#rawSet = read.metharray.exp(base=idatPath, targets=samp, force=TRUE, verbose=T)
#rawSet@annotation <- c(array = "IlluminaHumanMethylationMSA", annotation = "20a1.hg38")
#noob<-preprocessNoob(rawSet, offset = 15, dyeCorr = TRUE, verbose = TRUE,dyeMethod=c("single", "reference"))

Loading required package: IlluminaHumanMethylationMSAanno.20a1.hg38
Error in getAnnotationObject(object) :
  cannot load annotation package IlluminaHumanMethylationMSAanno.20a1.hg38


sessionInfo( )
R version 4.5.0 (2025-04-11)
Platform: x86_64-suse-linux-gnu
Running under: SUSE Linux Enterprise Server 15 SP4

Matrix products: default
BLAS:   /usr/lib64/R/lib/libRblas.so
LAPACK: /usr/lib64/R/lib/libRlapack.so;  LAPACK version 3.12.1

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

time zone: America/Chicago
tzcode source: system (glibc)

attached base packages:
[1] parallel  stats4    stats     graphics  grDevices utils     datasets
[8] methods   base

other attached packages:
 [1] IlluminaHumanMethylationMSAmanifest_0.1.0
 [2] IlluminaHumanMethylationEPICmanifest_0.3.0
 [3] minfi_1.54.1
 [4] bumphunter_1.50.0
 [5] locfit_1.5-9.12
 [6] iterators_1.0.14
 [7] foreach_1.5.2
MSAarray25 hcg110.db • 1.1k views
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Entering edit mode
@james-w-macdonald-5106
Last seen 1 day ago
United States

Thanks for the heads-up! I have fixed the typos and the updated version should be available for download in the next few days.

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