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Error from using library(IlluminaHumanMethylationMSAmanifest)
#library(minfi)
#library(IlluminaHumanMethylationMSAmanifest)
#rawSet = read.metharray.exp(base=idatPath, targets=samp, force=TRUE, verbose=T)
#rawSet@annotation <- c(array = "IlluminaHumanMethylationMSA", annotation = "20a1.hg38")
#noob<-preprocessNoob(rawSet, offset = 15, dyeCorr = TRUE, verbose = TRUE,dyeMethod=c("single", "reference"))
Loading required package: IlluminaHumanMethylationMSAanno.20a1.hg38
Error in getAnnotationObject(object) :
cannot load annotation package IlluminaHumanMethylationMSAanno.20a1.hg38
sessionInfo( )
R version 4.5.0 (2025-04-11)
Platform: x86_64-suse-linux-gnu
Running under: SUSE Linux Enterprise Server 15 SP4
Matrix products: default
BLAS: /usr/lib64/R/lib/libRblas.so
LAPACK: /usr/lib64/R/lib/libRlapack.so; LAPACK version 3.12.1
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
time zone: America/Chicago
tzcode source: system (glibc)
attached base packages:
[1] parallel stats4 stats graphics grDevices utils datasets
[8] methods base
other attached packages:
[1] IlluminaHumanMethylationMSAmanifest_0.1.0
[2] IlluminaHumanMethylationEPICmanifest_0.3.0
[3] minfi_1.54.1
[4] bumphunter_1.50.0
[5] locfit_1.5-9.12
[6] iterators_1.0.14
[7] foreach_1.5.2