Hi,
I have bam and bai files generated from my custom analysis pipeline, and I wanted to perform fragmentomics analysis on it using cfDNAPro. I am bit confused between 'readBam' vs 'read_bam_insert_metrics' commands. As mentioned in the documentation, both these commands input files is in 'bam' format. The 'readBam' output is 'curated GRanges object', while 'read_bam_insert_metrics' output is 'tibble'.
The confusion is:
readBam: "Read bam file into a curated GRanges object"
read_bam_insert_metrics: "Calculate insert sizes from a curated GRanges object"
Is the output of readBam is the input for read_bam_insert_metrics ?
Thanks
Rakesh
Thanks for the answer.