Entering edit mode
Hi,
I was running dar on one of my phyloseq datasets and all of the steps worked however, when I run the bake() and cool() steps, it results in an empty table.
To test whether it was an issue with my dataset, I ran the same steps on the example dataset (metHIV_phys) and still resulted in an empty table. I noticed that the different DA methods each have a "taxa_id" table however some are either populated with the Otu numbers or with NAs (photo included for refernce. Is this to be expected?
Hi Catherine, thanks so much for using dar and for reporting this bug!
We have identified the issue and pushed a fix to the dar repo (PR #118: https://github.com/MicrobialGenomics-IrsicaixaOrg/dar/pull/118). You can get the updated version directly from our GitHub repo: https://github.com/MicrobialGenomics-IrsicaixaOrg/dar
Alternatively, you can use the Bioconductor devel version. Note: Bioconductor is in a release-transition period, so the devel channel may be a bit unstable.
We are also actively working on dar 2.0 with many improvements and new features, and we are aiming to have it ready shortly after Christmas.
Please let us know if anything still looks off after updating - thanks again!