Hi all, I've got R 2.0.1 Aqua GUI OS X 10.3.9 ...and cannot get plier to compile from source. It's throwing cannot find malloc.h file errors... Just wondering if anyone has gotten it to install and if so, how? Thanks in advance, Ken

just put some ifdefs around the include #ifndef __APPLE_CC__ #include <malloc.h> #endif in file plier/src/plieralg.cpp stefano p.s. I'm forwarding this email to Crispin Miller which is the maintainer of the package. Crispin, can you patch this? On 14/giu/05, at 19:19, Ken Termiso wrote: > Hi all, > > I've got > > R 2.0.1 > Aqua GUI > OS X 10.3.9 > > ...and cannot get plier to compile from source. It's throwing > cannot find > malloc.h file errors... > > Just wondering if anyone has gotten it to install and if so, how? > > Thanks in advance, > Ken > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor >

Hi, If anyone does, please let me know and I'll try to patch the distribution.... Crispin -----Original Message----- From: bioconductor-bounces@stat.math.ethz.ch [mailto:bioconductor-bounces at stat.math.ethz.ch] On Behalf Of Ken Termiso Sent: 14 June 2005 18:19 To: bioconductor at stat.math.ethz.ch Subject: [BioC] Anyone get plier to install on OS X? Hi all, I've got R 2.0.1 Aqua GUI OS X 10.3.9 ...and cannot get plier to compile from source. It's throwing cannot find malloc.h file errors... Just wondering if anyone has gotten it to install and if so, how? Thanks in advance, Ken _______________________________________________ Bioconductor mailing list Bioconductor at stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/bioconductor -------------------------------------------------------- This email is confidential and intended solely for the use o...{{dropped}}

yes, despite the malloc.h error when installing from a local tar.gzip, it does put the plier folder into the R library folder and does load (along with deps) with no errors with load(plier)...but when calling justPlier() it returns '"Error: couldn't find function "justPlier"' i haven't had a chance to try stefano's suggestion yet.. >From: David Kipling <kiplingd at="" cardiff.ac.uk=""> >To: "Ken Termiso" <jerk_alert at="" hotmail.com=""> >Subject: Re: [BioC] Anyone get plier to install on OS X? >Date: Thu, 16 Jun 2005 08:35:53 +0100 > >Hi > >Are you referring to Crispin's justPLIER function? If so I got a similar >error on OS X as well. > >Since it is a wrapper round the affy PLIER SDK C code this may not be an >easy one for Crispin to track down... > >David > >Prof David Kipling >Department of Pathology >School of Medicine >Cardiff University >Heath Park >Cardiff CF14 4XN > >Tel: 029 2074 4847 >Email: KiplingD at cardiff.ac.uk >On 14 Jun 2005, at 18:19, Ken Termiso wrote: > >>Hi all, >> >>I've got >> >>R 2.0.1 >>Aqua GUI >>OS X 10.3.9 >> >>...and cannot get plier to compile from source. It's throwing cannot find >>malloc.h file errors... >> >>Just wondering if anyone has gotten it to install and if so, how? >> >>Thanks in advance, >>Ken >> >>_______________________________________________ >>Bioconductor mailing list >>Bioconductor at stat.math.ethz.ch >>https://stat.ethz.ch/mailman/listinfo/bioconductor >