Hi, Does anyone know why I'm getting errors trying to build a simple html table from my gene list? I have cloneIDs, and if I'm not wrong I always wrote table2html(selgenes, "genes.html", mapURL = SMDclid) to use Stanford Database clone IDs (as actually URLstring command shows..) but now I receive Error in table2html(geni, "genesUC.html", mapURL = SMDclid) : Object "SMDclid" not found SMDclid wasn't a valid option ? How and where can I link CloneIDs ? (BTW I'm just discovering that widget.mapGeneInfo it doesn't work anymore... it gives Error in widget.mapGeneInfo(names) : couldn't find function "widgetRender" thanks a lot Giulio >

Hi, You need to use the function "mapGeneInfo" to build a mapping between the column names of your data.frame object and the website you wanted to map it to. For example, if you have the following R object "selgene" being a data frame with the following info: Name GeneBank SMDID test AA176741 611425 You can create your own map using: mymap <- mapGeneInfo(Name="none", GeneBank="genbank", SMDID="SMDclid") table2html(selgenes, mapURL=mymap) will create a html with the GeneBank column having a hotlink to entrez and the SMDID column having a hotlink to source. Cheers Jean On Wed, 15 Jun 2005, Giulio Di Giovanni wrote: > Hi, > > Does anyone know why I'm getting errors trying to build a simple html table > from my gene list? > I have cloneIDs, and if I'm not wrong I always wrote > > table2html(selgenes, "genes.html", mapURL = SMDclid) > > to use Stanford Database clone IDs (as actually URLstring command shows..) > > but now I receive > > Error in table2html(geni, "genesUC.html", mapURL = SMDclid) : > Object "SMDclid" not found > > > SMDclid wasn't a valid option ? > How and where can I link CloneIDs ? > > (BTW I'm just discovering that widget.mapGeneInfo it doesn't work > anymore... it gives Error in widget.mapGeneInfo(names) : couldn't find > function "widgetRender" > > thanks a lot > > Giulio > > > > > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor >