Question

ComplexHeatmap installation Error

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m.azhar ▴ 10

@mazhar-12584

Last seen 7.5 years ago

I am trying to install package ComplexHeatmap using these commands

source("https://bioconductor.org/biocLite.R")
biocLite("ComplexHeatmap")

but i get this error

library("ComplexHeatmap")
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
there is no package called ‘modeltools’
Error: package or namespace load failed for ‘ComplexHeatmap’

so it try to install modetools but it says

Warning message:
package ‘modetools’ is not available (for R version 3.3.1)

so whats the solution I tried to insatll form github and from local file as well but the same problem

software error • 4.2k views

ADD COMMENT • link updated 4.1 years ago by James W. MacDonald 67k • written 7.7 years ago by m.azhar ▴ 10

score 3 · Answer 1 · 2017-04-02

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Mike Smith ★ 6.6k

@mike-smith

Last seen 2 hours ago

EMBL Heidelberg

The package specified in the error message is called 'modeltools', not 'modetools'. I'd suggest trying:

install.packages('modeltools')

ADD COMMENT • link 7.7 years ago Mike Smith ★ 6.6k

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THANKS LOT

ADD REPLY • link 7.7 years ago m.azhar ▴ 10

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I have similar issues. I am new user for R so some one can help in loading ComplexHeatmap library.

Thank you

library(ComplexHeatmap) Loading required package: grid Error: package or namespace load failed for ‘ComplexHeatmap’: .onLoad failed in loadNamespace() for 'Cairo', details: call: dyn.load(file, DLLpath = DLLpath, ...) error: unable to load shared object '/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Cairo/libs/Cairo.so': dlopen(/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Cairo/libs/Cairo.so, 6): Library not loaded: /opt/X11/lib/libXrender.1.dylib Referenced from: /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Cairo/libs/Cairo.so Reason: image not found In addition: Warning message: package ‘ComplexHeatmap’ was built under R version 4.0.3

ADD REPLY • link 4.1 years ago faiz.nca • 0

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That isn't a similar issue, and it's not useful to piggyback on existing unrelated threads from almost 4 years ago. Instead please make a new post and follow the posting guide.

ADD REPLY • link 4.1 years ago James W. MacDonald 67k