Hello, Im having some trouble with the htmlpage function in the package annotate. I want to import my top 100 list of probe ID's and use my annotation package to generate a html page. I am able to build the hyperlinks, but htmlpage will not paste the contents in "othernames" into the table. here is my code: library(AgilentHuman1av2) library(annotate) id<-read.table("24t_probeid.txt", header=T) probe<-as.matrix(id) symbol <- getSYMBOL(probe,data="AgilentHuman1av2") ll <- getLL(probe,data="AgilentHuman1av2") res<-data.frame(probe,cbind(unlist(symbol))) names(res)<-c("Probe ID","Gene Symbol") htmlpage(ll,filename="ll.html",title="Test",othernames=res,table.head= c("LocusID",names(res)),table.center=TRUE) I am using R 2.1.0, Annotate 1.5.15 on Linux. If someone are willing to enlighten me I would be very greatful morten

Morten Mattingsdal wrote: > Hello, > > Im having some trouble with the htmlpage function in the package > annotate. I want to import my top 100 list of probe ID's and use my > annotation package to generate a html page. I am able to build the > hyperlinks, but htmlpage will not paste the contents in "othernames" > into the table. > > here is my code: > library(AgilentHuman1av2) > library(annotate) > id<-read.table("24t_probeid.txt", header=T) > probe<-as.matrix(id) > symbol <- getSYMBOL(probe,data="AgilentHuman1av2") > ll <- getLL(probe,data="AgilentHuman1av2") > res<-data.frame(probe,cbind(unlist(symbol))) > names(res)<-c("Probe ID","Gene Symbol") > htmlpage(ll,filename="ll.html",title="Test",othernames=res,table.hea d=c("LocusID",names(res)),table.center=TRUE) > > I am using R 2.1.0, Annotate 1.5.15 on Linux. I think this is due to a bug I recently fixed. Try upgrading to annotate 1.5.16 and see if that helps. Best, Jim > > If someone are willing to enlighten me I would be very greatful > morten > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor -- James W. MacDonald Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623