Question

ClusterProfiler dotplot formatting

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marisa.e.miller • 0

@marisaemiller-13344

Last seen 6.1 years ago

Hello,

I've been using clusterProfiler enrichGO to test for enrichment and make summary dotplots. However, the plots sometimes cut off the bubbles on the right edge (see link below). Do you have any recommendations for fixing this issue?

Thanks,

Marisa

https://drive.google.com/open?id=0B9ZB8R0a3FHOQTZfaXZYS3QtM2c

clusterprofiler • 3.2k views

ADD COMMENT • link updated 7.5 years ago by Guangchuang Yu ★ 1.2k • written 7.5 years ago by marisa.e.miller • 0

score 0 · Answer 1 · 2017-07-10

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Guangchuang Yu ★ 1.2k

@guangchuang-yu-5419

Last seen 7 weeks ago

China/Guangzhou/Southern Medical Univer…

try: your_dot_plot + ggplot2::xlim(NA, 45) to allocate large space in right hand side.

see also https://guangchuangyu.github.io/ggtree/faq/#tip-label-truncated.

ADD COMMENT • link 7.5 years ago Guangchuang Yu ★ 1.2k