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Hi, I am trying to convert a Seurat object to SingleCellExperiment and getting the error below. Anyone had similar issues?
Code should be placed in three backticks as shown below
sce.object<- as.SingleCellExperiment(seurat.object)
Error in h(simpleError(msg, call)) : error in evaluating the argument 'flesh' in selecting a method for function 'relist': lazy-load database '/Library/Frameworks/R.framework/Versions/4.0/Resources/library/GenomeInfoDb/R/GenomeInfoDb.rdb' is corrupt In addition: Warning messages: 1: In new_GRanges("GRanges", seqnames = seqnames, ranges = ranges, : restarting interrupted promise evaluation 2: In new_GRanges("GRanges", seqnames = seqnames, ranges = ranges, : internal error -3 in R_decompress1
include your problematic code here with any corresponding output
please also include the results of running the following in an R session
sessionInfo( )
─ Session info ────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
setting value
version R version 4.0.3 (2020-10-10)
os macOS Catalina 10.15.7
system x86_64, darwin17.0
ui RStudio
language (EN)
collate en_US.UTF-8
ctype en_US.UTF-8
tz America/New_York
date 2020-12-08
```
Thanks so much! It worked!