Hi,

I want to use pathview to show changes in certain enriched KEGG pathways. The range of the log2FC in the comparisons is rather different. Therefore the pseudocoloring makes it hard to interpret the graph.

Is there a (simple) way to change it to absolute log2FC?

Thanks for your help! Best, Dagmar

A few pathview arguments you can play with including limit, bins , both.dirs etc. check function documentation for details.