User: rasii

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rasii0
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Posts by rasii

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Issue with finding .idat files when analysing illumina methylation microarrays using RnBeads
... Hi,   I'm trying to analyse my Illumina methylation EPIC microarray data using RnBeads and I get the following error when i do:   rnb.run.analysis(dir.reports=reportDir, sample.sheet=sampleSheet, data.dir=idatDir, data.type="infinium.idat.dir") 2016-08-28 09:37:17 0.5 STATUS ...
illumina methylation rnbeads epic microarray written 3.1 years ago by rasii0
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Lumi error in importMethylIDAT
... Hi all, I'm trying to analyse some methylation data that was taken from Illumina methylation EPIC microarray using lumi and I get the following error when I try to import my data. What could I be doing wrong? Any help is highly appreciated.. > library("lumi", lib.loc="C:/R-3.3.0beta/library") ...
lumi illumina methylation written 3.4 years ago by rasii0 • updated 3.4 years ago by James W. MacDonald51k
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Error in Matrix
... Hi all, I am analysing the new Illumina EPIC methylation array and I keep getting the following error. Can anyone help me figure what/where I've gone wrong. Below is the code I have used: >require(minfi) >targets <- read.metharray.sheet(baseDir) > RGset <- read.metharray.exp(targe ...
minfi illumina methylation epic microarray written 3.4 years ago by rasii0 • updated 3.4 years ago by Kasper Daniel Hansen6.4k
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Comment: C: Installing MethylationEPIC minifest and annotation
... I managed to install Bioc 3.3 but now when I try to install IlluminaHumanMethylationEPICmanifest i get the following error: Warning messages: 1: running command '"C:/R-33~1.0BE/bin/x64/R" CMD INSTALL -l "C:\R-3.3.0beta\library" C:\Users\kanis\AppData\Local\Temp\Rtmpa0qDCj/downloaded_packages/Illumi ...
written 3.4 years ago by rasii0
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Comment: C: Installing MethylationEPIC minifest and annotation
... Hi Martin, That for your suggestion. I installed bioc but it seems to be v3.2. Do you know where i can find bioc 3.3? Rasi ...
written 3.4 years ago by rasii0
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Comment: C: Installing MethylationEPIC minifest and annotation
... Hi guys, Have another question and I have to apologise if this sounds like a silly question to ask (new to all of this) So I've installed the two packages so does that mean when I run minfi it will automatically use the EPIC manifest and anno or will it use the 450k ones? Is there a command I need ...
written 3.4 years ago by rasii0
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Answer: A: Installing MethylationEPIC minifest and annotation
... Hi guys, Have another question and I have to apologise if this sounds like a silly question to ask (new to all of this) So I've installed the two packages so does that mean when I run minfi it will automatically use the EPIC manifest and anno or will it use the 450k ones? Is there a command I need ...
written 3.4 years ago by rasii0
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Answer: A: Installing MethylationEPIC minifest and annotation
... Thanks so much guys! Managed to install them...now to work out how to use it to analyze my .idat files.. Rasi ...
written 3.4 years ago by rasii0
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Installing MethylationEPIC minifest and annotation
... Hi, I am fairly new to R programming and using Bioconductor packages. I am trying to install  IlluminaHumanMethylationEPICmanifest_0.3.0.tar.gz and IlluminaHumanMethylationEPICanno.ilm10b2.hg19_0.3.0.tar.gz which I downloaded from https://bitbucket.org/hansenlab/illumina_epic. I read that we need t ...

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Popular Question 3.1 years ago, created a question with more than 1,000 views. For Installing MethylationEPIC minifest and annotation

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