User: lisa.crossman

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Posts by lisa.crossman

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Comment: C: Error bars DESeq or DESeq2 fold change
... Thanks so much!  I have now generated the numbers for the upper and lower whiskers and the BaseMeanA and BaseMeanB.  I have plotted a few example genes using the lower and upper numbers from the lfc+/-lfcSE as ymin and ymax to ggplot2 geom_errorbar().     ...
written 3.7 years ago by lisa.crossman0
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Answer: A: Error bars DESeq or DESeq2 fold change
... Brilliant thank you!  I have generated your above figure to discuss with the collaborators  ...
written 3.7 years ago by lisa.crossman0
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Error bars DESeq or DESeq2 fold change
... Hi, Some time ago I ran DESeq (one) on a set of data comparing two conditions of growth over 4 biological replicates per each condition. A collaborator constructed a graph of fold change from that output for approximately 15 genes of interest. I have a request from a peer reviewer to provide erro ...
rnaseq deseq deseq2 confidence interval standard error written 3.7 years ago by lisa.crossman0 • updated 3.7 years ago by Simon Anders3.6k

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Popular Question 3.7 years ago, created a question with more than 1,000 views. For Error bars DESeq or DESeq2 fold change

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