User: John Townsend

gravatar for John Townsend
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s*****************@alumni.ucl.ac.uk

Posts by John Townsend

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SVA: Using ComBat for synthetic genetic array data
... Hi everyone, I have a couple of questions about using ComBat from the sva package for batch effect normalisations of synthetic genetic array (SGA) data. Briefly, for anyone who's not familiar, SGAs are a high-throughput method for detecting genetic interactions in yeast. A deletion library is used ...
combat batch effect combat sva sga written 3.1 years ago by John Townsend20
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Comment: C: SVA: Including variable of interest in ComBat model matrix
... Thanks for the quick reply Evan! That helps a lot ...
written 3.1 years ago by John Townsend20
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SVA: Including variable of interest in ComBat model matrix
... Hi there, I'm trying to remove batch effects from some high-throughput data using the ComBat function in the sva package. It's not clear in the current tutorial guide (https://bioconductor.org/packages/release/bioc/vignettes/sva/inst/doc/sva.pdf) whether the variable of interest should be included ...
sva combat batch effect combat sva written 3.1 years ago by John Townsend20 • updated 3.1 years ago by W. Evan Johnson800

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