User: nature.hunger
nature.hunger • 0
- Reputation:
- 0
- Status:
- New User
- Location:
- Last seen:
- 8 months, 2 weeks ago
- Joined:
- 1 year, 5 months ago
- Email:
- n************@hotmail.com
Posts by nature.hunger
<prev
• 7 results •
page 1 of 1 •
next >
0
votes
1
answers
302
views
1
answers
... These days I got an answer from your Pathview web server. Because it has no hsa04215 pathway in your web server. But it has hsa04215 pathway in KEGG website (http://www.kegg.jp/pathway/hsa04215).
...
written 8 months ago by
nature.hunger • 0
0
votes
1
answers
308
views
1
answers
... Thanks! It works fine now!
...
written 9 months ago by
nature.hunger • 0
0
votes
1
answers
308
views
1
answers
... Thank you very much! It is the reason that I am not using the newest version of clusterProfilier. It might be the reason of my Bioconducter(V3.3) is not the newest version. So when I following the installation instructions as:
source("https://bioconductor.org/biocLite.R")
biocLite("clusterProfiler ...
written 9 months ago by
nature.hunger • 0
0
votes
1
answers
308
views
1
answers
... Thanks. I have a another question. why setReadable function can't support in enrichKEGG function output with entrenz gene ID but can be used in uniprot ID. I had google that the previously version had the readable parameter, but it is useless now.
...
written 9 months ago by
nature.hunger • 0
0
votes
1
answers
308
views
1
answers
... Thanks a lot ! I am trying to imply it into differentially expression genes list from my projects. And I had try these two methods. The number of genes in the same enriched KEGG pathway are different and consequently results to the KEGG pathway rank differently. So that I can only put my gene list i ...
written 9 months ago by
nature.hunger • 0
0
votes
1
answer
308
views
1
answer
... I am trying to runing the example of clusterprofiler from "http://www.bioconductor.org/packages/devel/bioc/vignettes/clusterProfiler/inst/doc/clusterProfiler.html#abstract" and "https://guangchuangyu.github.io/2016/05/convert-biological-id-with-kegg-api-using-clusterprofiler/". I got an question in ...
written 9 months ago by
nature.hunger • 0
• updated 9 months ago by
Guangchuang Yu • 700
0
votes
1
answer
302
views
1
answer
...
I got an Error about only 0's may be mixed with negative subscripts. I read a txt file as data.frame , it has more than 100 rows with 2 columns. And 4 genes are enriched in hsa04215 pathway. And I extract it from data.frame and transform to a vector, look like
> xx
836 596 5599 ...
written 9 months ago by
nature.hunger • 0
Latest awards to nature.hunger
No awards yet. Soon to come :-)
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.2.0
Traffic: 174 users visited in the last hour