The support.bioconductor.org editor has been updated to markdown! Please see more info at: Tutorial: Updated Support Site Editor

User: nature.hunger

gravatar for nature.hunger
Reputation:
20
Status:
New User
Location:
Last seen:
2 years, 1 month ago
Joined:
2 years, 9 months ago
Email:
n************@hotmail.com

Posts by nature.hunger

<prev • 7 results • page 1 of 1 • next >
1
vote
2
answers
948
views
2
answers
Answer: A: only 0's may be mixed with negative subscripts
... These days I got an answer from your Pathview web server. Because it has no hsa04215 pathway in your web server. But it has hsa04215 pathway in KEGG website (http://www.kegg.jp/pathway/hsa04215). ...
written 2.1 years ago by nature.hunger • 20
0
votes
1
answer
725
views
1
answers
Comment: C: Got an confusing about BgRatio in enrichKEGG result of clusterprofiler
... Thanks! It works fine now!  ...
written 2.2 years ago by nature.hunger • 20
0
votes
1
answer
725
views
1
answers
Comment: C: Got an confusing about BgRatio in enrichKEGG result of clusterprofiler
... Thank you very much! It is the reason that I am not using the newest version of clusterProfilier. It might be the reason of my Bioconducter(V3.3) is not the newest version. So when I following the installation instructions as: source("https://bioconductor.org/biocLite.R") biocLite("clusterProfiler ...
written 2.2 years ago by nature.hunger • 20
0
votes
1
answer
725
views
1
answers
Comment: C: Got an confusing about BgRatio in enrichKEGG result of clusterprofiler
... Thanks. I have a another question. why setReadable function can't support in enrichKEGG function output with entrenz gene ID but can be used in uniprot ID. I had google that the  previously version had the readable parameter, but it is useless now. ...
written 2.2 years ago by nature.hunger • 20
0
votes
1
answer
725
views
1
answers
Comment: C: Got an confusing about BgRatio in enrichKEGG result of clusterprofiler
... Thanks a lot ! I am trying to imply it into differentially expression genes list from my projects. And I had try these two methods. The number of genes in the same enriched KEGG pathway are different and consequently results to the KEGG pathway rank differently. So that I can only put my gene list i ...
written 2.2 years ago by nature.hunger • 20
0
votes
1
answer
725
views
1
answer
Got an confusing about BgRatio in enrichKEGG result of clusterprofiler
... I am trying to runing the example of clusterprofiler from  "http://www.bioconductor.org/packages/devel/bioc/vignettes/clusterProfiler/inst/doc/clusterProfiler.html#abstract" and "https://guangchuangyu.github.io/2016/05/convert-biological-id-with-kegg-api-using-clusterprofiler/". I got an question in ...
clusterprofiler written 2.2 years ago by nature.hunger • 20 • updated 2.2 years ago by Guangchuang Yu • 1.1k
2
votes
2
answers
948
views
2
answers
only 0's may be mixed with negative subscripts
... I got an Error about only 0's may be mixed with negative subscripts. I read a txt file as data.frame , it has more than 100 rows with 2 columns. And 4 genes are enriched in hsa04215 pathway. And I extract it from data.frame and transform to a vector, look like > xx       836       596      5599 ...
pathview written 2.2 years ago by nature.hunger • 20 • updated 15 months ago by map2085 • 10

Latest awards to nature.hunger

No awards yet. Soon to come :-)
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 230 users visited in the last hour