Admin: shepherl

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shepherl ♦♦ 280
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Posts by shepherl

<prev • 43 results • page 1 of 5 • next >
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Answer: A: RStudio in Bioconductor 3.5 AMI incompatible with R 3.4
... Our AMI's for Bioc 3.5 and Bioc 3.6 have been updated.  It should now include the updated Rstudio  ...
written 13 days ago by shepherl ♦♦ 280
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News: complete set of OrgDb packages have been added to AnnotationHub
... Hello all,  The complete set of OrgDb packages have been added to AnnotationHub and are now available in both release and devel versions of Bioconductor.     The following example is for release: > library(AnnotationHub) > hub <- AnnotationHub() updating metadata: retrieving 1 resource ...
orgdb annotationhub news bioconductor written 13 days ago by shepherl ♦♦ 280
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Answer: A: problem in installing flowclust
... Also it appears that the `flowClust` package has not build correctly on Bioconductor 3.5 so the maintainer might have to make some changes before it will become available.  ...
written 14 days ago by shepherl ♦♦ 280
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News: ensembl 89 gtfs and fasta twobits have been added to AnnotationHub
... Hello all,  The ensembl 89 gtf (converted to GRanges on the fly) and fasta (twobit files) been added to AnnotationHub and are currently available in Bioc3.6 (development) with AnnotationHub (<= 2.9.0):   ```  > library(AnnotationHub) > hub = AnnotationHub() updating metadata: retrieving ...
annotationhub news bioconductor ensembl89 written 15 days ago by shepherl ♦♦ 280
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Answer: A: problem in installing flowclust
... This sounds similar to this support site question: https://support.bioconductor.org/p/96368/  .  It might be that you are missing some system dependency or the fortran or C compilers in order to install the package correctly. ...
written 15 days ago by shepherl ♦♦ 280
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Comment: C: problem in installing flowclust
... Do you have system admin rights on the computer you are trying to use?   Please also include the command you used to try to install, the output, and the results of running `sessionInfo()` .   ...
written 16 days ago by shepherl ♦♦ 280
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Answer: A: RStudio in Bioconductor 3.5 AMI incompatible with R 3.4
... Thank you for making us aware of this issue.  We will update our version of Rstudio provided with the AMIs;  it will probably be a few weeks for the update to take place.  ...
written 17 days ago by shepherl ♦♦ 280
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Answer: A: Parallel reading of Vcfs using VcfStack/RangedVcfStack
... Thank you very much for your interest.  We think this is a good suggestion and will look at implementing sometime during the next month.  ...
written 4 weeks ago by shepherl ♦♦ 280
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News: ensembl 87 and 88 gtfs and fasta twobits have been added to AnnotationHub
... Hello all,  The ensembl 87 and 88 gtfs (converted to GRanges on the fly) have been added to AnnotationHub and are currently available: > library(AnnotationHub) > hub = AnnotationHub() updating metadata: retrieving 1 resource |============================================================== ...
annotationhub news bioconductor written 6 weeks ago by shepherl ♦♦ 280
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Comment: C: R getting "stuck" with RoadMap resource retrieval through AnnotationHub
... No problem.  We've all dealt with slow network issues.  Feel free to post more if you find you are having any other issues.  ...
written 7 weeks ago by shepherl ♦♦ 280

Latest awards to shepherl

Scholar 14 months ago, created an answer that has been accepted. For A: survcomp package - censor missing
Teacher 14 months ago, created an answer with at least 3 up-votes. For A: survcomp package - censor missing

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