Admin: shepherl

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shepherl ♦♦ 300
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Posts by shepherl

<prev • 46 results • page 1 of 5 • next >
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Comment: C: makeTxDbFromGFF Error: subscript contains NAs
... It is hard for me to try to debug this without the file that is causing problems.  Could you please email me off list (lori.shepherd@roswellpark.org)  to figure out a solution.  ...
written 2 days ago by shepherl ♦♦ 300
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Comment: C: ENCODE examples from vignette do not work (missing data?)
... We have reached out to the coMET maintainer as this is an issue with their package.  We hope they will be responsive soon. ...
written 8 days ago by shepherl ♦♦ 300
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Answer: A: Parallel reading of Vcfs using VcfStack/RangedVcfStack
... Sorry for the delay.  We have made updates and this should be implemented in the devel version of GenomicFiles >= 1.13.9 ...
written 22 days ago by shepherl ♦♦ 300
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Answer: A: RStudio in Bioconductor 3.5 AMI incompatible with R 3.4
... Our AMI's for Bioc 3.5 and Bioc 3.6 have been updated.  It should now include the updated Rstudio  ...
written 6 weeks ago by shepherl ♦♦ 300
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News: complete set of OrgDb packages have been added to AnnotationHub
... Hello all,  The complete set of OrgDb packages have been added to AnnotationHub and are now available in both release and devel versions of Bioconductor.     The following example is for release: > library(AnnotationHub) > hub <- AnnotationHub() updating metadata: retrieving 1 resource ...
orgdb annotationhub news bioconductor written 6 weeks ago by shepherl ♦♦ 300
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Answer: A: problem in installing flowclust
... Also it appears that the `flowClust` package has not build correctly on Bioconductor 3.5 so the maintainer might have to make some changes before it will become available.  ...
written 6 weeks ago by shepherl ♦♦ 300
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News: ensembl 89 gtfs and fasta twobits have been added to AnnotationHub
... Hello all,  The ensembl 89 gtf (converted to GRanges on the fly) and fasta (twobit files) been added to AnnotationHub and are currently available in Bioc3.6 (development) with AnnotationHub (<= 2.9.0):   ```  > library(AnnotationHub) > hub = AnnotationHub() updating metadata: retrieving ...
annotationhub news bioconductor ensembl89 written 6 weeks ago by shepherl ♦♦ 300
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Answer: A: problem in installing flowclust
... This sounds similar to this support site question: https://support.bioconductor.org/p/96368/  .  It might be that you are missing some system dependency or the fortran or C compilers in order to install the package correctly. ...
written 6 weeks ago by shepherl ♦♦ 300
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Comment: C: problem in installing flowclust
... Do you have system admin rights on the computer you are trying to use?   Please also include the command you used to try to install, the output, and the results of running `sessionInfo()` .   ...
written 6 weeks ago by shepherl ♦♦ 300
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Answer: A: RStudio in Bioconductor 3.5 AMI incompatible with R 3.4
... Thank you for making us aware of this issue.  We will update our version of Rstudio provided with the AMIs;  it will probably be a few weeks for the update to take place.  ...
written 6 weeks ago by shepherl ♦♦ 300

Latest awards to shepherl

Scholar 15 months ago, created an answer that has been accepted. For A: survcomp package - censor missing
Teacher 15 months ago, created an answer with at least 3 up-votes. For A: survcomp package - censor missing

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