Admin: shepherl

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shepherl ♦♦ 1.3k
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United States
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2 years, 12 months ago
Email:
l************@roswellpark.org

Bioconductor Core Team Member.

I work as a Bioconductor Core Team Member out of Roswell Park Comprehensive Cancer Center in Buffalo, NY.  I'm active in many areas of the project but notably maintain the Single Package Builder for new submissions, AWS resources, Bioconductor core docker images, the main Bioconductor website, and this support site.  While all members of the team offer support and maintenance of core package and core structures, I'm particularly more responsible for BiocCheck, BiocFileCache, and the Hubs (AnnotationHub, AnnotationHubData, ExperimentHub, ExperimentHubData). 

Posts by shepherl

<prev • 257 results • page 1 of 26 • next >
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Comment: C: Trouble installing GOSemSim
... What is your `sessionInfo()`? ...
written 13 hours ago by shepherl ♦♦ 1.3k
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News: Important Release Deadlines this week!!!
... Some Important Release Deadlines are fast approaching. See also the [release schedule online](http://bioconductor.org/developers/release-schedule/) The last day for any NEW package to be accepted and released under Bioc 3.9 is this **Wed. April 24th.** Packages accepted after this day will remain ...
news release deadlines written 2 days ago by shepherl ♦♦ 1.3k
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Answer: A: Final List of Deprecated Package Bioc 3.9
... `DOQTL` has also requested deprecation. ...
written 9 days ago by shepherl ♦♦ 1.3k
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Comment: C: Final List of Deprecated Package Bioc 3.9
... `SVM2CRM` has also requested deprecation `rSFFreader` will also be deprecated ...
written 12 days ago by shepherl ♦♦ 1.3k
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Answer: A: Unable to load mzR due to built on Rcpp version (1.0.0)
... Could you first try loading from the Bioconductor repository rather than github `BiocManager::install("xcms")` ...
written 13 days ago by shepherl ♦♦ 1.3k
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Comment: C: Possibly bug in newSeqExpressionSet function
... In the future please add the package that the function comes from as a post tag. Please also include the full `sessionInfo()` that show the versions of the packages you are using. Your versions information you provide does not include the package the function came from. ...
written 15 days ago by shepherl ♦♦ 1.3k
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Answer: A: Final List of Deprecated Package Bioc 3.9
... `gCrisprTools` has reached out and the package will no longer be deprecated. `flowQB` and `flowQBData` will be deprecated. ...
written 15 days ago by shepherl ♦♦ 1.3k
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Comment: C: ChemmineOB installation failed
... Did the location of the installed libopenbabel.so get added to the LD_LIBRARY_PATH? Maybe something like ``` export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib ``` http://openbabel.org/wiki/Install_(source_code) ...
written 15 days ago by shepherl ♦♦ 1.3k
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Answer: A: ExperimentHub downloading files to home directory (~)
... We agree and have actually just pushed changes this past week in devel that uses the `rappdirs::user_cache_dir` to decide the directory. This function utilizes "Typical user cache directories" now as default. Keep in mind the directory (of the older versions of ExperimentHub and new) can be altere ...
written 15 days ago by shepherl ♦♦ 1.3k
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Answer: A: Final List of Deprecated Package Bioc 3.9
... There are two other software package that will be deprecated for this coming release. ``` NGScopy spliceSites ``` ...
written 16 days ago by shepherl ♦♦ 1.3k

Latest awards to shepherl

Autobiographer 3 months ago, has more than 80 characters in the information field of the user's profile.
Guru 4 months ago, received more than 100 upvotes.
Scholar 5 months ago, created an answer that has been accepted. For A: survcomp package - censor missing
Scholar 6 months ago, created an answer that has been accepted. For A: survcomp package - censor missing
Scholar 7 months ago, created an answer that has been accepted. For A: survcomp package - censor missing
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: Is there any annotation package for MSEA?
Scholar 8 months ago, created an answer that has been accepted. For A: survcomp package - censor missing
Scholar 10 months ago, created an answer that has been accepted. For A: survcomp package - censor missing
Scholar 22 months ago, created an answer that has been accepted. For A: survcomp package - censor missing
Appreciated 22 months ago, created a post with more than 5 votes. For DOI for packages
Centurion 22 months ago, created 100 posts.
Scholar 22 months ago, created an answer that has been accepted. For A: MSstats package update
Commentator 22 months ago, created a comment with at least 3 up-votes. For C: Bioconductor packages now each have a DOI.
Teacher 3.0 years ago, created an answer with at least 3 up-votes. For A: survcomp package - censor missing
Scholar 3.0 years ago, created an answer that has been accepted. For A: survcomp package - censor missing

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