Admin: shepherl

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shepherl ♦♦ 620
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620
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United States
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17 hours ago
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2 years, 1 month ago
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l************@roswellpark.org

Posts by shepherl

<prev • 141 results • page 1 of 15 • next >
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Comment: C: Changing box plot font sizes for axes and labels in DiffBind
... I looked at the internal code and this does appear to be a bug.  The documentation advertises that the "..." can be additional arguments to the boxplot function but the code does not reflect this.  I have reached out to the maintainer to report this.   ...
written 9 days ago by shepherl ♦♦ 620
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Comment: C: Does BiocWorkflowTools package generate F1000Reseach/Bioconductor-stype PDF at o
... From a Bioconductor stand point,  We encourage the use of BiocStyle but allow for other types of vignettes styles.  Using the F1000 Style for a vignette is already perfectly acceptable.  ...
written 22 days ago by shepherl ♦♦ 620
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Comment: C: SeqPattern plotPatternOccurrenceAverage problem
... In the internal code for this plotting function the ylim was hard coded by the maintainer. In its current state there is not an easy way around this. I would suggest emailing the maintainer directly to point out the potential bug. Maintainer: Vanja Haberle <vanja.haberle@gmail.com> ...
written 22 days ago by shepherl ♦♦ 620
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Comment: C: VariantAnnotation::locateVariants error coming from XVector
... I believe the changes in S4Vectors were reverted so you could use the latest versions of all packages now.  ...
written 22 days ago by shepherl ♦♦ 620
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Comment: C: SeqPattern plotPatternOccurrenceAverage problem
... Please include the code and output as well as `sessionInfo()` ...
written 22 days ago by shepherl ♦♦ 620
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Comment: C: How to obtain summary statistics for all Bioc releases
... I am adding the package count statistics and older versions of BioC/R that appear on the wikipedia page to the release announcement webpage so it will be available in both locations. It should be updated within the hour. ...
written 23 days ago by shepherl ♦♦ 620
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Comment: C: How to obtain summary statistics for all Bioc releases
... Also not a programmatic solution, but at each release we post the release date and number of packages on the Bioconductor Wikipedia page ...
written 23 days ago by shepherl ♦♦ 620
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Comment: C: GenomicDatacommon execution error
... I am not able to reproduce this on the most recent version of GenomicDataCommons. You might try updating to R 3.5 and using the latest version of the package. ...
written 24 days ago by shepherl ♦♦ 620
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Comment: C: KEGGSOAP:: KEGGxmlns object not found
... The KEGGSOAP package was removed from Bioconductor in 2.13 release as documented here. Please ensure you are using updated packages and package functions as many functionality from KEGGSOAP was moved to KEGGREST. Please see the documentation. ...
written 4 weeks ago by shepherl ♦♦ 620
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News: List of Deprecated Packages for Bioc3.8
... The Bioconductor Team is continuing to identify packages that will be deprecated in the next release to allow for the Bioconductor community to respond accordingly. The list will be updated monthly. The current list of deprecated packages is as follows: Maintainer requested deprecation: Experimen ...
news package release deprecate written 4 weeks ago by shepherl ♦♦ 620

Latest awards to shepherl

Scholar 12 months ago, created an answer that has been accepted. For A: MSstats package update
Centurion 12 months ago, created 100 posts.
Appreciated 12 months ago, created a post with more than 5 votes. For DOI for packages
Commentator 12 months ago, created a comment with at least 3 up-votes. For C: Bioconductor packages now each have a DOI.
Scholar 12 months ago, created an answer that has been accepted. For A: survcomp package - censor missing
Scholar 2.2 years ago, created an answer that has been accepted. For A: survcomp package - censor missing
Teacher 2.2 years ago, created an answer with at least 3 up-votes. For A: survcomp package - censor missing

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