Admin: shepherl

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shepherl ♦♦ 380
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Posts by shepherl

<prev • 63 results • page 1 of 7 • next >
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News: Deadline for Packages and Data Bioc3.6
... Hi Bioconductor Community, The release of Bioconductor 3.6 will be Tuesday, October 31. Please see the schedule for details: release schedule Some important deadlines that are coming up: Friday October 6 is the deadline for new package submissions. Packages submitted before this date, the core will ...
news release package submission written 2 days ago by shepherl ♦♦ 380
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Answer: A: List of Deprecated Packages for Bioc3.6
... MEAL and DSS will continue to be in Bioconductor as their maintainers have made updates.  ...
written 2 days ago by shepherl ♦♦ 380
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News: Workflows now building on Bioc3.6
... Hello, The workflow builder has been updated to use Bioconductor 3.6 in preparation for the release. Please monitor any workflows you may maintain and debug accordingly. Also, new workflows will now be submitted to Bioconductor in the form of a package as documented: Here Thank you Lori ...
news workflows written 3 days ago by shepherl ♦♦ 380
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Comment: C: Suggestion: spinning wheel for AnnotationHub
... Great to hear!  ...
written 4 days ago by shepherl ♦♦ 380
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Answer: A: Suggestion: spinning wheel for AnnotationHub
... We made some changes to AnnotationHub display that seems to help with the speed of searches.  We are still investigating solutions to adding a progress/busy notification.   ...
written 5 days ago by shepherl ♦♦ 380
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Answer: A: Unable to install TCGAbiolinks
... gridExtra changed some of their function names which TCGAbiolinks imported;  Until TCGAbiolinks updates their NAMESPACE and code this ERROR will occur.  The Bioconductor team is in the process of reaching out to TCGAbiolinks to make the appropriate changes.  For now installing the older version of g ...
written 9 days ago by shepherl ♦♦ 380
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Answer: A: querying annotation hub for common TF, in common cell line returns no results...
... Could you provide a little detail about what you were trying to accomplish and what type of file or output you expected? The AnnotationHub::query() function only queries AnnotationHub Resources in Bioconductor; It is not an interactive query with web based hosts. The query you provided is too spec ...
written 9 days ago by shepherl ♦♦ 380
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Comment: C: package or namespace load failed for TCGAbiolinks
... Yes until TCGAbiolinks updates their NAMESPACE file, this ERROR will occur.   ...
written 10 days ago by shepherl ♦♦ 380
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News: List of Deprecated Packages for Bioc3.6
... The Bioconductor Team is continuing to identify packages that will be deprecated in the next release to allow for the Bioconductor community to respond accordingly.  The list will be updated monthly leading up to the release. The current list of deprecated packages is as follows: Unresponsive/not-ma ...
news deprecate written 15 days ago by shepherl ♦♦ 380
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Answer: A: Error package or namespace load failed for MAIT
... Unfortunately the MAIT package is marked for deprecation and will no longer be supported by Bioconductor.  The package maintainers have been unresponsive and their package has been broken in both current release and devel versions of Bioconductor for quite some time.  You may reach out to the mainta ...
written 15 days ago by shepherl ♦♦ 380

Latest awards to shepherl

Scholar 17 months ago, created an answer that has been accepted. For A: survcomp package - censor missing
Teacher 17 months ago, created an answer with at least 3 up-votes. For A: survcomp package - censor missing

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