Admin: shepherl

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shepherl ♦♦ 560
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Posts by shepherl

<prev • 120 results • page 1 of 12 • next >
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Comment: C: problem installing bioconductor
... could you please also show the results of `sessionInfo()`    Are you able to open https://bioconductor.org/biocLite.R  in a webbrowser?    Traditional when this ERROR appears, it generally seems to be an issue with a Firewall preventing internet access.  ...
written 1 day ago by shepherl ♦♦ 560
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News: DEADLINE: All packages to pass R CMD build and R CMD check
... This is a reminder that the last day to pass R CMD build and R CMD check is this Wednesday April 25th.  Please update all package that are failing on the build reports by this time.  Software Packages: http://bioconductor.org/checkResults/3.7/bioc-LATEST/ Data Experiment Packages: http://biocondu ...
experimentdata news software workflows release written 2 days ago by shepherl ♦♦ 560
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News: ensembl 92 gtfs and fasta twobits have been added to AnnotationHub
... Hello all, The ensembl 92 gtf (converted to GRanges on the fly) and fasta (twobit files) been added to AnnotationHub and are currently available in Bioc 3.7 Bioconductor version 3.7 (BiocInstaller 1.29.6), ?biocLite for help > library(AnnotationHub) > hub = AnnotationHub() snapshotDate(): 2 ...
annotationhub news ensembl gtf 2bit written 6 days ago by shepherl ♦♦ 560
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Comment: C: ReportingTools Segmentation fault
... So I was also having segfault issues on my machine with a number of different packages including this one. My fix was a little drastic  but ... I updated  my version of gcc and g++  to use 5.4.1  and then installed the appropriate version of libgfortran for version 5.  I then deleted my local R li ...
written 6 days ago by shepherl ♦♦ 560
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Answer: A: Accessing R 3.4.2 version on mac, to use 'rnaseqGene' package
... We just implemented the workflow download with biocLite() and works for Bioc 3.7 - Could you try the old installation and see if this works; perhaps it should have only been advertised for the devel until the release: source("http://bioconductor.org/workflows.R") workflowInstall("rnaseqGene") ...
written 7 days ago by shepherl ♦♦ 560
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Comment: C: Accessing R 3.4.2 version on mac, to use 'rnaseqGene' package
... Can you please post the commands and the ERROR you are seeing when you try to install the package.  ...
written 7 days ago by shepherl ♦♦ 560
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Comment: C: ReportingTools Segmentation fault
... biocLite("ReportingTools", INSTALL_opts="--no-test-load") will load the package but you likely will still encounter segfault ERROR. What is your results from running the following commands: `R CMD config CC` --version `R CMD config CXX` --version ...
written 8 days ago by shepherl ♦♦ 560
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Comment: C: GenomicRanges::slidingWindows - method is not in the library
... Could you please include your sessionInfo() ...
written 11 days ago by shepherl ♦♦ 560
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Answer: A: Final List of Deprecated Packages for Bioc3.7
... BrowserVizDemo  has also requested deprecation.  ...
written 11 days ago by shepherl ♦♦ 560
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News: Final List of Deprecated Packages for Bioc3.7
... The Bioconductor Team has identified the following list of deprecated packages:   Maintainer requested deprecation:     Software Package: ontoCAT spliceR (functionalities moved to IsoformSwitchAnalyzeR) mvGST       Experiment Data Package: RnaSeqTutorial cheung2010 MEALData (replaced ...
news package release deprecate written 22 days ago by shepherl ♦♦ 560

Latest awards to shepherl

Scholar 24 months ago, created an answer that has been accepted. For A: survcomp package - censor missing
Teacher 24 months ago, created an answer with at least 3 up-votes. For A: survcomp package - censor missing

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