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User: Mnoon

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Mnoon10
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Posts by Mnoon

<prev • 6 results • page 1 of 1 • next >
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how to plot PCA for only one of two groups compared or plot three groups at a time
... Hi,  I have two questions about my RNA-Seq datasets that I have analyzed using Deseq2. I have used PCA plots for exploratory purposes. Out of the two groups (each group has 3 biological replicates) compared, samples of one group are spread apart on the plot and its really hard to decide which of th ...
deseq2 bioconductor rna-seq pca written 2.3 years ago by Mnoon10 • updated 2.3 years ago by Michael Love21k
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Comment: C: Problem with biomart's listMarts function
... Its working just fine now. Thank you Martin! ...
written 2.8 years ago by Mnoon10
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Comment: C: Problem with biomart's listMarts function
... http://uswest.ensembl.org/biomart/martservice?type=registry&requestid=biomaRt When I paste the line in browser I get this error: Proxy Error The proxy server received an invalid response from an upstream server. The proxy server could not handle the request GET /biomart/martservice. Reason:  ...
written 2.8 years ago by Mnoon10 • updated 2.8 years ago by Martin Morgan ♦♦ 22k
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Comment: C: Problem with biomart's listMarts function
... here is the output of mirrors: > listMarts(host = 'uswest.ensembl.org' ) Space required after the Public Identifier SystemLiteral " or ' expected SYSTEM or PUBLIC, the URI is missing Entity 'nbsp' not defined Error: 1: Space required after the Public Identifier 2: SystemLiteral " or ' expected 3 ...
written 2.8 years ago by Mnoon10
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Comment: C: Problem with biomart's listMarts function
... Hi Johannes,  I tried " options(useFancyQuotes=FALSE)" and got the error below. > options(useFancyQuotes=FALSE) > ensembl.human <- useMart(biomart = "ENSEMBL_MART_ENSEMBL", dataset = "hsapiens_gene_ensembl",  host = "www.ensembl.org" ) Space required after the Public Identifier SystemLit ...
written 2.8 years ago by Mnoon10
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Answer: A: Problem with biomart's listMarts function
... its still not working for me.. Here is what I get: > ensembl.human <- useMart(biomart = "ENSEMBL_MART_ENSEMBL", dataset = "hsapiens_gene_ensembl",  host = "www.ensembl.org" ) Space required after the Public Identifier SystemLiteral " or ' expected SYSTEM or PUBLIC, the URI is missing Entity ' ...
written 2.8 years ago by Mnoon10

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