User: shuoguo

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shuoguo10
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2 years, 7 months ago
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2 years, 11 months ago
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Posts by shuoguo

<prev • 5 results • page 1 of 1 • next >
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Answer: A: Gviz: UcscTrack() getting error when there is no genes in the region
... Just in case in the future people run into the same issue.  I have temporarily "fixed" this issue by removing the two lines in the command: gene="name", feature="name2", please let me know if you have other ways. Thanks, ...
written 2.6 years ago by shuoguo10
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Gviz: UcscTrack() getting error when there is no genes in the region
... I have this function and sometimes it gives me error: refGenes <- UcscTrack(track="RefSeq Genes",                         table="refGene",                         trackType="GeneRegionTrack",                         genome=genome_build,                         chromosome=chrom,                   ...
ucsctrack givz written 2.6 years ago by shuoguo10
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Comment: C: UcscTrack scan() error
... Thanks! Will do. - Shuoguo ...
written 2.6 years ago by shuoguo10
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gviz: stacking option for plotTracks function
... Hi, I am using gviz to plot bed format file. I have a pair of bed files, with equal lines in them and each line is the same name. e.g. file1.bed chr4 190954356 190968056 group-1 0 + ... (the rest of the fields omitted here) chr4 190962609 191009216 grou ...
gviz plottracks stacking written 2.6 years ago by shuoguo10 • updated 2.6 years ago by florian.hahne@novartis.com1.6k
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UcscTrack scan() error
... i am using gviz and it has been awesome. but i could not get the H3K27Ac tracks work properly. it sometimes works: > htrack <- UcscTrack(genome = "hg19", +                           chromosome = "chr7", +                           track = "Layered H3K27Ac", +                           tabl ...
gviz written 3.0 years ago by shuoguo10 • updated 2.9 years ago by florian.hahne@novartis.com1.6k

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