User: Lukas Weber

gravatar for Lukas Weber
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Status:
New User
Location:
Zurich, Switzerland
Website:
https://github.com/lmw...
Twitter:
lmwebr
Last seen:
1 month ago
Joined:
1 year, 4 months ago
Email:
l********@gmail.com

PhD student in biostatistics, University of Zurich, Switzerland

Posts by Lukas Weber

<prev • 5 results • page 1 of 1 • next >
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Answer: A: cydar: negative values for cell assignment indices
... Great, thank you for the quick reply! Using the 'unpackIndices()' function has now worked correctly. ...
written 10 weeks ago by Lukas Weber0
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cydar: negative values for cell assignment indices
... Hi, I have been trying out the 'cydar' package for testing for differential abundance in mass cytometry data, which was published a few months ago (Lun et al., 2017, Nature Methods). In order to evaluate the performance of the algorithm, I have been looking at results at both the 'hypersphere' lev ...
cydar written 10 weeks ago by Lukas Weber0
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FlowSOM and ConsensusClusterPlus: reproducibility issue
... Hi, I have a question about reproducibility of meta-clustering results in FlowSOM. My colleague Malgorzata Nowicka noticed a while ago that the 'metaClustering_consensus' function does not give reproducible results when setting a seed with 'set.seed()'. Then we saw that this is because 'metaCluste ...
consensusclusterplus flowsom written 6 months ago by Lukas Weber0
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Answer: A: flowCore: 'truncate_max_range' argument in 'read.flowSet'
... Great, thanks for the quick reply and update. I'll also look into using `read.ncdfFlowSet` in future. Lukas ...
written 6 months ago by Lukas Weber0
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flowCore: 'truncate_max_range' argument in 'read.flowSet'
... Hi, I have a question about reading in data from multiple FCS files with `read.flowSet` from the flowCore package. By default, both `read.FCS` and `read.flowSet` truncate values outside the specified instrument measurement range. The `read.FCS` function (for a single FCS file) also includes an arg ...
flowcore written 6 months ago by Lukas Weber0

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