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User: wliao

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wliao0
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Posts by wliao

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Limma with paired samples and SVA
... I have an experimental design as follows:   Patient Disease Treatment 1 Unaffected Treated 1 Unaffected Untreated 2 Unaffected Treated 2 Unaffected Untreated 3 Unaffected Treated 3 Unaffected U ...
limma sva duplicatecorrelation estimatecellcounts written 16 months ago by wliao0 • updated 16 months ago by Aaron Lun22k
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diffHic - incorporating NB-loess, CNV, and ICE offset into DGEList object
... I'm trying to incorporate NB-loess, CNV, and ICE offset in my DGEList object before running estimateDisp().  ice.corrected <- correctedContact(data,winsor.high=0.02,ignore.low=0.02,exclude.local=1,average=FALSE) anchor1.bias <- ice.corrected$bias[anchors(data,type="first",id=TRUE),] anchor2. ...
diffhic written 2.7 years ago by wliao0 • updated 2.7 years ago by Aaron Lun22k

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