User: tati6406

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tati64060
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Posts by tati6406

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gene expression data analysis and batch effect methods
... I have a gene expression data including intrinsic subtypes of breast cancer, but it does not have paired normal samples, Is it possible to use normal samples from different batch if I use batch effect removal methods eg COMBAT or DWD? ...
batch effect gene expression written 22 months ago by tati64060 • updated 22 months ago by chris86380
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gene expression data analysis and batch effect methods
... I have a gene expression data including intrinsic subtypes of breast cancer, but it does not have paired normal samples, Is it possible to use normal samples from different batch if I use batch effect removal methods eg COMBAT or DWD? ...
batch effect gene expression written 22 months ago by tati64060
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CEL file to expressionSet
... Hi  I have 2500 CEL files, I put them in my work directory and then I ran `ReadAffy`()`, but It gave me "cannot allocate vector of size of... error , I've tried with 500 CEL file and I gave the same error again,please let me know about your experience in this case Thanks in advance ...
affydata expressonset written 2.7 years ago by tati64060 • updated 2.7 years ago by James W. MacDonald49k
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limma for gene expression analysis with big and unbalanced sample size
... Hi Dears I am not very familiar with limma, I want use limma for finding DEGs of two different phenotype  But there are some ambiguous issues for me in using limma for this work. Sample size of my phenotypes are completely different about 100 for control and 800 for case,now I don't know does limm ...
microarray limma statistics written 2.8 years ago by tati64060 • updated 2.8 years ago by Aaron Lun23k

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