User: crysis405

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crysis40510
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Posts by crysis405

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regionR randomizeRegions allow.overlaps option
... The documentation of the allow.overlaps option is confusing: allow.overlaps - A boolean stating whether the random regions can overlap (FALSE) or not (TRUE). allow.overlaps = TRUE does not allow overlaps, while FALSE allows overlaps? Is this a typo? ...
regionr written 3 months ago by crysis40510
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Comment: C: mm10 phastCons data for use with ATACseqQC
... Hi Robert, the authors of ATACseqQC use the phastCons100way.UCSC.hg19 library so I think the rounding should not be a problem. Would be great if you could generate phastCons60way.UCSC.mm10. Thank you. ...
written 23 months ago by crysis40510
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mm10 phastCons data for use with ATACseqQC
... Just started testing the new ATACseqQC package. Its pretty neat until you want to do nucleosome positioning in something other than human. One of the things you need is the library(phastCons100way.UCSC.hg19) No one has made an equivalent library for mouse yet. So I was going to go get it from UCSC ...
bsgenome rtracklayer phastcons atacseqqc written 23 months ago by crysis40510 • updated 23 months ago by Ou, Jianhong1.1k
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How to edit parameters and description of fcs file
... I would like to edit my fcs file just like its possible in fcsexpress (image bellow). I have attempted the following:   fcs_hq <-flowCore::read.FCS(PT1, transformation = FALSE) params <- flowCore::parameters(fcs_hq) desc <- flowCore::description(fcs_hq) #Adding a new column fnames <- ...
flowcore written 2.8 years ago by crysis40510 • updated 2.8 years ago by Jiang, Mike1.2k
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Comment: C: Error when launching shiny app in cytofkit
... The error seems to only be produced when running the command from within RStudio ...
written 2.9 years ago by crysis40510
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Comment: C: Error when launching shiny app in cytofkit
... I get the same error: > cytofkitShinyAPP() Loading required package: shiny Attaching package: ‘gplots’ The following object is masked from ‘package:stats’: lowess Error in FUN(X[[i]], ...) : cannot open file '~/R/win-library/3.3/reshape/data/Rdata.rdb': No such file or directory ...
written 2.9 years ago by crysis40510
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Error when launching shiny app in cytofkit
... Error when launching shiny app in cytofkit: launchShinyAPP_GUI("F:/Sync/cytometry/resultsQC/cytofkit.RData") Error in FUN(X[[i]], ...) : cannot open file '~/R/win-library/3.3/reshape2/data/Rdata.rdb': No such file or directory   The file does exist: > list.files('~/R/win-library/3.3/res ...
cytofkit written 2.9 years ago by crysis40510 • updated 2.9 years ago by chen_hao30

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Popular Question 22 months ago, created a question with more than 1,000 views. For How to edit parameters and description of fcs file

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