User: sara.beier

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sara.beier0
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Posts by sara.beier

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normalisation of count data
... Hello I am using both the normMatrix and the controlGenes option in DeSeq to create size Factors in a RNA-Seq time series experiment to test against changes against T0 using the LRT-test. If working with a full dataset and a second dataset containing count data only for a subset of genes (though t ...
deseq2 written 11 months ago by sara.beier0 • updated 11 months ago by Ryan C. Thompson7.2k
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size factor correction in DeSeq2
... Hi, I am using DeSeq2 for a set of metatranscriptome data for which I also do have estimations for the number of total transcripts per L within each sample. As I can clearly see from my data that the number of transcripts per L is influenced by the type of treatment, I would prefer to make statisti ...
deseq2 written 2.4 years ago by sara.beier0 • updated 2.4 years ago by Michael Love22k

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