User: carine.genet

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Posts by carine.genet

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Comment: C: Problem duplicated samples for ChangeCtLayout in HTqPCR with fluidigm 96*96
... Please not that I truncated the order content for easy viewing (so my order data contains 84 names).   ...
written 10 months ago by carine.genet0
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Problem duplicated samples for ChangeCtLayout in HTqPCR with fluidigm 96*96
... Dear all, I have qPCR data obtained with Fluidigm biomark array 96*96 with HTqPCR package (it's not digital PCR). I have n.features=78 (including 17 duplicated genes) and n.data=84 (30 duplicated samples, 5 duplicated points (standard curve for efficiency), 1 duplicated calibrator sample, and 4 sin ...
htqpcr written 10 months ago by carine.genet0
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Comment: C: Not able to reproduce limma results from affy chip with or without CEL file from
... Thank you SamGG and Aaron Lun. I Finally obtained the DEG list ...which is not at all the same find in the article...so maybe I will discard these data. Regards Carine ...
written 10 months ago by carine.genet0
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Comment: C: Not able to reproduce limma results from affy chip with or without CEL file from
... Hello James, Thanks again for your help and explanation.I 'm not fluent with statistical models so your lights are very welcome. In fact these two cells type were obtained from the same cows, in the same lab, by the same people, with the same lot of chips ...and was published in 2015 in Plos one. ...
written 10 months ago by carine.genet0
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Not able to reproduce limma results from affy chip with or without CEL file from 2 GSE datasets
... Dear all, I need your help because I was not able to obtain a list of DEGs with limma analysis from two GSE datasets. Basically, I want to compare two sets of data generated on the same platform (GPL2112; single channel experiment) and corresponding to two GSEs (10 samples from GSE39589 (GSM972638 ...
affy limma geoquery written 10 months ago by carine.genet0 • updated 10 months ago by James W. MacDonald45k
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Comment: C: How to compare 10 GSMxxxxx from one GSE to 10 GSM from another GSE with GEOQuery
... Thank a lot, James for your quick answer.   ...
written 11 months ago by carine.genet0
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How to compare 10 GSMxxxxx from one GSE to 10 GSM from another GSE with GEOQuery
... Hello, I want to compare 10 GSM (GSM1200157 to GSM1200166) from GSE39589 and 10 GSM (GSM972638 to GSM972647) from GSE49505 (same platform, same species, and same tissue). I followed the GEOquery manual page but was not able to set adequately the expr(gset) of the two . Any advice will be greatly ...
geoquery written 11 months ago by carine.genet0 • updated 11 months ago by James W. MacDonald45k

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