User: georges.bedran

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Posts by georges.bedran

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Answer: A: calculateRPKM error in customProDB
... Hello, since the last few bioconductor updates the keepSeqlevels functions had the default pruning.mode option changed to raise an erorr in case arg1 and arg2 contain different levels (chromosomes). You only have to add the argument pruning.mode="coarse" to replicate the old behaviour. You just h ...
written 8 months ago by georges.bedran0
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aaVariation function bug (Methonine instead of Leucine)
... Hello, I'm currently working on a proteogenomics project, and using customProDB to generate a custom protein database, it's a great R package and i find it really helpful. However, I recently discovered a bug with the aaVariation function were Leucine is predicted as Methionine. # R example : &g ...
translation customprodb written 8 months ago by georges.bedran0 • updated 4 months ago by xiaojing.wang50
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customProDB, OutputVarproseq function update (snvproseq)
... hello, I'm currently working on a proteogenomics project, and using customProDB to generate a custom protein database, it's a great R package and i find it really helpful. Since the last package update i noticed that the function OutputVarproseq has started generating the following error :  Erro ...
customprodb written 2.0 years ago by georges.bedran0 • updated 24 months ago by xiaojing.wang50
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CustomproDB JunctionType function
... hello, i'm currently working on a proteogenomics project, and i am using customProDB to generate a custom DB, it's a great R package and i find it really helpful. During the process and while trying to generate my novel junctions peptides fasta, I believe that I ran into a little bug. at line 131 ...
customprodb written 2.5 years ago by georges.bedran0 • updated 2.5 years ago by xiaojing.wang50

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