User: maximilianh

gravatar for maximilianh
maximilianh10
Reputation:
10
Status:
New User
Location:
UCSC
Website:
http://genome-test.soe...
Twitter:
maximilianh
Last seen:
2 years, 3 months ago
Joined:
2 years, 10 months ago
Email:
m**********@gmail.com

Posts by maximilianh

<prev • 6 results • page 1 of 1 • next >
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Answer: A: GFF3 format from ucsc
... It depends on the format of your tab-sep file. If you have a genePred file, the only one where GFF really makes sense, UCSC has the tool genePredToGtf, and Gtf is just a somewhat tighter-spec GFF file . The tool can be downloaded from http://hgdownload.soe.ucsc.edu/admin/exe/ ...
written 2.2 years ago by maximilianh10
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Answer: A: browseGenome rtracklayer, save / export UCSC genome browser image e.g. as pdf
... you can use genome.ucsc.edu/cgi-bin/hgRenderTracks to obtain only the image for a given configuration.  the parameters are documented here: https://genome.ucsc.edu/goldenpath/help/customTrack.html#SHARE ...
written 2.2 years ago by maximilianh10
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Answer: A: rtracklayer redistributes UCSC source without the original license?
... everything under src/lib is in the public domain. You're fine. If you are unsure about the license, you can email us at genome-www@soe.ucsc.edu or the UCSC mailing list. ...
written 2.2 years ago by maximilianh10
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Answer: A: Giemsa stain annotation/nomenclature for UCSC cytoband tracks
... You have found an outdated page with descriptions and we will remove this old page.  The real track descriptions can be found if you click on a track from within the browser.  The "chromosome bands" page is this one: http://genome.ucsc.edu/cgi-bin/hgTrackUi?c=chr21&g=cytoBand It says that th ...
written 2.2 years ago by maximilianh10
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Comment: C: Giemsa stain annotation/nomenclature for UCSC cytoband tracks
... UCSC is here!      ...
written 2.2 years ago by maximilianh10
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Answer: A: Gviz error 'Expectation Failed'
... Is rtracklayer scraping the hgGateway page? If yes, why? What data is rtracklayer getting here? Isn't it a lot easier to get the data through the public mysql server? ...
written 2.9 years ago by maximilianh10

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