User: AR3513

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AR35130
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Posts by AR3513

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Answer: A: KEGGgraph warning: "In structure(x$children, class = "XMLNodeList") :"
... Thanks very much! ...
written 6 days ago by AR35130
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Comment: C: KEGGgraph warning: "In structure(x$children, class = "XMLNodeList") :"
... Thanks very much for your reply. See below: > library(KEGGgraph) Attaching package: ‘KEGGgraph’ The following object is masked from ‘package:graphics’:     plot > library(RCurl) Loading required package: bitops > path = "rno00010" > path = "rno00010" > file = paste("http://rest.k ...
written 9 days ago by AR35130
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Answer: A: KEGGgraph warning: "In structure(x$children, class = "XMLNodeList") :"
... Thanks very much for your reply. Yes, I know the code is working without problems, but it would be great if you could fix it (if possible) to avoid getting all these warnings. Best wishes,  Andrea   ...
written 19 days ago by AR35130
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KEGGgraph warning: "In structure(x$children, class = "XMLNodeList") :"
... Hello,  I have been recently getting a warning message with KEGGgraph. See the following example: library(KEGGgraph) library(RCurl) path = "rno00010" file = paste("http://rest.kegg.jp/get/", path, "/kgml", sep = "") pathway = try(getURL(file), silent = TRUE) reactions = try(getReactions(parseKG ...
kegggraph written 20 days ago by AR35130
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Comment: C: Cannot read plink files correctly
... Ahh!! Thanks very much!! ________________________________ From: zhengx [bioc] <noreply@bioconductor.org> Sent: 02 June 2017 18:43:58 To: Rodriguez Martinez, Andrea Subject: [bioc] A: Cannot read plink files correctly Activity on a post you are following on support.bioconductor.org<https: s ...
written 26 days ago by AR35130
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Cannot read plink files correctly
... Hello,  I am trying to read PLINK files into R, using snpgdsBED2GDS(). However, it doesnt read it correctly. I have 1988 samples and 548476 SNPs, but the function reads it the other way around (i.e. 1988 samples and 548476 SNPs). See details below. Any help? Thanks,  Andrea > mydata2 = snpgds ...
snprelate tutorial written 26 days ago by AR35130 • updated 26 days ago by zhengx10
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Answer: A: Problem trying to decorate a heatmap inside a function
... Hi again,  Thanks very much for your very detailed response. That is extremely helpful.  Best wishes,  Andrea ...
written 9 weeks ago by AR35130
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Answer: A: Problem trying to decorate a heatmap inside a function
... Hello,  I have now another question regarding this. As you can see below, in this small toy function I generate a variable called ht1, that then should be used by "decorate_column_dend()", however, when when I run the function I get an error message saying that ht1 was not found. Any help?? Thanks ...
written 9 weeks ago by AR35130
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Comment: C: Problem trying to decorate a heatmap inside a function
... Great!! Thanks so much!! Best regards, Andrea ________________________________ From: James W. MacDonald [bioc] <noreply@bioconductor.org> Sent: 26 April 2017 17:17:28 To: Rodriguez Martinez, Andrea Subject: [bioc] A: Problem trying to decorate a heatmap inside a function Activity on a pos ...
written 9 weeks ago by AR35130
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Problem trying to decorate a heatmap inside a function
... Hello,  I'm trying to write a function that creates and decorates a heatmap based on a given input data. The code works well, but not when it's written within a function. I'll simplify what I mean by using a very simple example from one of the vignettes of the package:  library(ComplexHeatmap) ## ...
complexheatmap written 9 weeks ago by AR35130

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