User: swebb1

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swebb10
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Posts by swebb1

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Comment: C: DMRseq smoothed values
... Hi Keegan, I was essentially looking for the lines plotted in plotDMRs() function but I assume these are just created on the fly. I will run BSmooth for the entire genome for now, thanks for your help. ...
written 14 months ago by swebb10
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DMRseq smoothed values
... Is there a way to export the smoothed methylation values from DMRseq across the entire genome? I'd like to store them in  bigWig file to view in a genome browser. ...
dmrseq written 14 months ago by swebb10 • updated 14 months ago by keegan60
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Comment: C: Transcript level differential expression analysis
... Hi Michael, I was wondering if you have made any progress on testing differential expression at the transcript level with DESeq2. ...
written 18 months ago by swebb10
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Gviz plotting gene region
... I am using Gviz to plot a region given by a gene name, for instance: biomTrack <- BiomartGeneRegionTrack(genome ="sacCer3",name="ENSEMBL",gene="YBL087C") plotTracks(list(btrack)) This works fine. I also want to add another annotation track: btrack<-AnnotationTrack(start = c(100,200,300),w ...
gviz written 3.3 years ago by swebb10 • updated 3.3 years ago by florian.hahne@novartis.com1.6k

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