User: c.evang

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c.evang0
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Posts by c.evang

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Comment: C: DESeq2 3-fatcor design and different interaction terms
... Thanks Michael for your answer. I will take into account your suggestions. Thanks again, Chiara ...
written 2.8 years ago by c.evang0
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Comment: C: DESeq2 3-fatcor design and different interaction terms
... Hi gavinpaulkelly and Micheal, thanks very much for your replies. if I understand correctly, if I want to test the genotype effect: results(dds, type="LRT", full= ~genotype + treatment + timepoint, reduced= ~ treatment + timepoint) And to extract the results of log2foldchange of pairs of genoty ...
written 2.8 years ago by c.evang0
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DESeq2 3-fatcor design and different interaction terms
... Hi, I am using DESeq2 to analyze differential expressed genes (DEGs) from counts generated by Illumina sequencing. I have a 3-factor experiment: genotype (with 3 levels): A, B, and C, each with 6 biological replicates (3 for each treatment) treatment (with 2 level): mDr (the treatment) and WW ...
rnaseq deseq2 bioconductor interactions multifactorial design written 2.9 years ago by c.evang0 • updated 2.9 years ago by Michael Love24k

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