User: addyS

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addyS0
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Posts by addyS

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Identifying long stretches of Ns in hg19
... Is there a R package to identify long stretches of gaps (Ns) in human genome (hg19)? ...
hg19 bsgenome.hsapiens.ucsc.hg19 written 11 months ago by addyS0 • updated 11 months ago by Mike Smith3.0k
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Significance of mutations
... Are there any existing tools for computing the significance of mutations occurring in non coding regions? Can I use mutSig for mutations occurring in non coding regions? ...
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Comment: C: Locating enhancers that are mutated
... Thanks a lot. countOverlaps did the job :) ...
written 2.2 years ago by addyS0
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Locating enhancers that are mutated
... Hi, I have a two dataframes,one containing the genomic co-ordinates of enhancers (column names :#chr,start,end ) and the other containing the SNV position (column names : chr,position).My objective is to obtain those enhancers that are mutated,resultant dataframe should have  the following columns ...
variantannotation genomicranges granges indel snv written 2.2 years ago by addyS0 • updated 2.2 years ago by Michael Lawrence10k

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