User: s.munster

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s.munster40
Reputation:
40
Status:
New User
Location:
USA/Oklahoma City
Last seen:
1 year, 1 month ago
Joined:
3 years, 2 months ago
Email:
s************@faa.gov

Posts by s.munster

<prev • 16 results • page 1 of 2 • next >
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Problems running oligo functions in parallel on a linux computer
...    I am currently operating a linux (scientific linux 7.4) computer with 8 cores.  I would like to run some of the functions from oligo, like RMA, in parallel and have not had any success.    I have tried the suggestions in the oligo manual to use ff or to use foreach and doMC and neither of these ...
oligo biocparallel linux parallel rma written 22 months ago by s.munster40
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Answer: A: BioC happening in 2018?
... Thanks for letting me know.  Is there any way to find out more information sooner than the 6-8 weeks before the conference?   ...
written 2.2 years ago by s.munster40
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BioC happening in 2018?
... I am very interested the course offiered "BioC 2017: Where Software and Biology Connect" and am wondering if something similar will be held in 2018.  I noticed that upcoming events are advertised 6-8 weeks in advance.  However, I need to plan out my training for entire fiscal year ahead of time.  Wi ...
course bioc 2018 written 2.2 years ago by s.munster40
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Comment: C: problems filtering antigenomic probes from HTA 2.0
... The new update worked beautifully! THANKS!!!! ...
written 2.5 years ago by s.munster40
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Comment: C: Bioconductor Software download
... I have resolved my concerns with the bioconductor software - thanks! ...
written 2.5 years ago by s.munster40
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Comment: C: Bioconductor Software download
...   Thank you for your quick response.  The policy where I work for this computer is absolutely no internet access so what I need is a stand-alone installation of the bioconductor software.     Is the bioconductor software something separate, or is it a wrap around to install packages like biobase?  ...
written 2.5 years ago by s.munster40
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Bioconductor Software download
... I want to install bioconductor onto a computer that does not have (and cannot be connected to) internet access.  Can I use the BiocInstaller package to do this?  Is there somewhere else I can go to get a download of the software?  Thanks in advance! ...
biocinstaller bioconductor download written 2.5 years ago by s.munster40
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Comment: C: problems filtering antigenomic probes from HTA 2.0
... THANKS!!!! I will be looking for the new updates! ...
written 2.5 years ago by s.munster40
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Comment: C: problems filtering antigenomic probes from HTA 2.0
... My apologies for the mistakes in how I posted this.  I understand your statement that "none of the antigenomic probes actually get summarized into probesets at the transcript summary".  I am confused because there are probesets in my summarized (after running rma) transcript summary that look very m ...
written 2.7 years ago by s.munster40
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Answer: A: problems filtering antigenomic probes from HTA 2.0
... > antiprbs <- dbGetQuery(con, "select * from featureSet where type='2';") > coremps <- dbGetQuery(con, "select * from core_mps;") > any(antiprbs$fsetid %in% coremps$fsetid) [1] FALSE > z <- getMainProbes("pd.hta.2.0") Error: could not find function "getMainProbes" > library(a ...
written 2.7 years ago by s.munster40

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