User: s.munster

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s.munster20
Reputation:
20
Status:
New User
Location:
USA/Oklahoma City
Last seen:
6 months, 1 week ago
Joined:
1 year, 11 months ago
Email:
s************@faa.gov

Posts by s.munster

<prev • 16 results • page 1 of 2 • next >
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Problems running oligo functions in parallel on a linux computer
...    I am currently operating a linux (scientific linux 7.4) computer with 8 cores.  I would like to run some of the functions from oligo, like RMA, in parallel and have not had any success.    I have tried the suggestions in the oligo manual to use ff or to use foreach and doMC and neither of these ...
oligo biocparallel linux parallel rma written 6 months ago by s.munster20
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Answer: A: BioC happening in 2018?
... Thanks for letting me know.  Is there any way to find out more information sooner than the 6-8 weeks before the conference?   ...
written 11 months ago by s.munster20
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BioC happening in 2018?
... I am very interested the course offiered "BioC 2017: Where Software and Biology Connect" and am wondering if something similar will be held in 2018.  I noticed that upcoming events are advertised 6-8 weeks in advance.  However, I need to plan out my training for entire fiscal year ahead of time.  Wi ...
course bioc 2018 written 11 months ago by s.munster20
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Comment: C: problems filtering antigenomic probes from HTA 2.0
... The new update worked beautifully! THANKS!!!! ...
written 14 months ago by s.munster20
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Comment: C: Bioconductor Software download
... I have resolved my concerns with the bioconductor software - thanks! ...
written 14 months ago by s.munster20
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Comment: C: Bioconductor Software download
...   Thank you for your quick response.  The policy where I work for this computer is absolutely no internet access so what I need is a stand-alone installation of the bioconductor software.     Is the bioconductor software something separate, or is it a wrap around to install packages like biobase?  ...
written 14 months ago by s.munster20
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Bioconductor Software download
... I want to install bioconductor onto a computer that does not have (and cannot be connected to) internet access.  Can I use the BiocInstaller package to do this?  Is there somewhere else I can go to get a download of the software?  Thanks in advance! ...
biocinstaller bioconductor download written 14 months ago by s.munster20
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Comment: C: problems filtering antigenomic probes from HTA 2.0
... THANKS!!!! I will be looking for the new updates! ...
written 14 months ago by s.munster20
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Comment: C: problems filtering antigenomic probes from HTA 2.0
... My apologies for the mistakes in how I posted this.  I understand your statement that "none of the antigenomic probes actually get summarized into probesets at the transcript summary".  I am confused because there are probesets in my summarized (after running rma) transcript summary that look very m ...
written 17 months ago by s.munster20
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Answer: A: problems filtering antigenomic probes from HTA 2.0
... > antiprbs <- dbGetQuery(con, "select * from featureSet where type='2';") > coremps <- dbGetQuery(con, "select * from core_mps;") > any(antiprbs$fsetid %in% coremps$fsetid) [1] FALSE > z <- getMainProbes("pd.hta.2.0") Error: could not find function "getMainProbes" > library(a ...
written 17 months ago by s.munster20

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