User: guillermo.marco

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Spain
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Posts by guillermo.marco

<prev • 7 results • page 1 of 1 • next >
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Comment: C: Pathview pathview kegg.native=TRUE throws error in img
... I've experienced this issue with other pathways too. I can't enumerate them because I don't have logs. ...
written 6 months ago by guillermo.marco20
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Pathview pathview kegg.native=TRUE throws error in img
... I'm trying to retrieve some native from KEGG using pathview. However I'm experiencing an error with a specific pathway that I'm not able to debug or solve. I've been able to retrieve other pathways with different pathway.id without any problem. However "hsa04215" is failing, I would like to know if ...
rnaseq pathview error bioconductor kegg written 7 months ago by guillermo.marco20 • updated 6 months ago by Luo Weijun1.4k
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Comment: C: Pathview: *** caught segfault *** cause 'memory not mapped'
... I also had this error. Solved it updating libxml on my Centos cluster then re-installing XML library in R. ...
written 13 months ago by guillermo.marco20
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Comment: C: Pathview: Exporting non native KEGG pathway ignoring same.layer argument
... Did mistake when writing the original post, but edited later. Could you please the code (edited in question) and report if you're also getting two pages instead of one?   ...
written 13 months ago by guillermo.marco20
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Pathview: Exporting non native KEGG pathway ignoring same.layer argument
... When using pathview to save the following Sus scrofa KEGG pathway same.layer = TRUE argument seems to be ignored when also using kegg.native = FALSE. This is not happening with all the KEGG pathways, however I can't a find a repeat behavior. Pathway PDF is generated in two sheets with legend on seco ...
rgraphviz pathview kegg graphviz written 13 months ago by guillermo.marco20 • updated 13 months ago by Luo Weijun1.4k
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Comment: C: Pathview: Exporting non native KEGG pathway to PNG
... Thanks for the fast answer! Regards, Guillermo. ...
written 13 months ago by guillermo.marco20
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Pathview: Exporting non native KEGG pathway to PNG
... Hello, I'm trying to export a KEGG using the Pathview package. I'm interested on KEGG non-native plot (kegg.native = F). It works like a charm however it only exports the plot to PDF format. Is there any workaround to generate the plot also in PNG format? pathview(gene.data = geneList, ...
pathview bioconductor graphviz graphics written 13 months ago by guillermo.marco20 • updated 12 months ago by dondelelcaro10

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