User: biomiha

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biomiha10
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UK/Cambridge
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1 month, 3 weeks ago
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1 year, 11 months ago
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Posts by biomiha

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Comment: C: Error in dimnames(x) <- dn : length of 'dimnames' [1] not equal to array exte
... The FCS repository is a good source. I've been using this one (https://flowrepository.org/id/FR-FCM-ZZ36) to play with. ...
written 7 months ago by biomiha10
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Comment: C: Error in dimnames(x) <- dn : length of 'dimnames' [1] not equal to array exte
... Thanks Mike. That works now. Apologies. M ...
written 7 months ago by biomiha10
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Comment: C: Error in dimnames(x) <- dn : length of 'dimnames' [1] not equal to array exte
... So, the reasoning is the same every time you run a FACS compensation panel. You take your controls (cells or beads) that will bind an antibody and you stain them with single colours to generate you single stained samples. Then you run them on the machine and look at all of the detectors to see how m ...
written 7 months ago by biomiha10
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Comment: C: Error in dimnames(x) <- dn : length of 'dimnames' [1] not equal to array exte
... Hi,   I think you get the `Error: Baseline not in this set.` because the unstained control is not specified correctly. If you change that to the index of the unstained control, you'll get the dimnames error again. There is a bug in the spillover function that I'm not able to locate. I know there ...
written 7 months ago by biomiha10
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Comment: C: Error in dimnames(x) <- dn : length of 'dimnames' [1] not equal to array exte
... Thanks SamGG, The thing is that I get the same error with other flowSets, irrespective of how I read them in. So far, I've got the same error with each and every set of FCS files I've tried. The one I used for my reprex was just the code from the flowCore vignette. Do you not get the error with you ...
written 7 months ago by biomiha10
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Error in dimnames(x) <- dn : length of 'dimnames' [1] not equal to array extent
... Hi, I'm trying to use the spillover function from the flowCore package.  I'm not sure what's wrong but any set of compensation samples (i.e. unstained and single stained) I use it on, I always get the same error: Error in dimnames(x) <- dn :       length of 'dimnames' [1] not equal to array e ...
flowcore spillover written 7 months ago by biomiha10 • updated 7 months ago by Jiang, Mike1.1k
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Comment: C: opencyto Error in .validity_check_alias
... Incidentally, do you still have the gt_080.csv template file anywhere? I'm trying to follow the example here but the link from the tutorials (https://www.dropbox.com/s/jdigjss903q3sgu/gt_080.csv) is broken. Or is that just ICS_080.csv now instead? ...
written 9 months ago by biomiha10
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Comment: C: opencyto Error in .validity_check_alias
... Hi Mike, Thanks for your reply and comments. I'll read through the documentation you suggested - I have started collating all the different vignettes, tutorials and templates I can find scattered in various places on the internet. Re your template comment: I just used the templateGen function on a ...
written 9 months ago by biomiha10
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Comment: C: Qualifier / getQAStats: Problem to get statisric from a GatingSet
... Yes, that works now. Thanks. ...
written 9 months ago by biomiha10
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Comment: C: opencyto Error in .validity_check_alias
... For some reason Dropbox has changed their sharing options and I had to add an email to share the template. I hope it was delivered to the right email address. ...
written 9 months ago by biomiha10

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