User: ladypurrsia

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Posts by ladypurrsia

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Answer: A: Error in Pathview parsing: "Parsing ./ko00195.xml file failed, please check the
... Thank you very much! I had recently downloaded the package (only a few days), but I went ahead and did an update on all bioconductor packages. The command works now, however ;only when kegg.native = TRUE. If kegg.native = FALSE, I get the following error: Note: Only KEGG ortholog gene ID is support ...
written 9 days ago by ladypurrsia0
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Error in Pathview parsing: "Parsing ./ko00195.xml file failed, please check the file!"
... Hello BioConductor Group: I have recently downloaded the package pathview. My dataset is a matrix that looks like this: > head SP.KEGG                   log2FoldChange K00005     -1.5503608 K00045     -0.7369513 K00150     -1.4072273 K00214     -1.3487558 K00218     -1.8065475 K02703     -0.65 ...
pathview kegg parsing written 13 days ago by ladypurrsia0
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Comment: A: Cannot download org.Hs.egPATH
... Thank you so very much, Martin! Joany ...
written 15 months ago by ladypurrsia0
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Cannot download org.Hs.egPATH
... Hello: I have a list of Kegg Orthology (K) numbers that I would like to covert from K to entrezID to use clusterProfiler package. Currently, I am trying to install the package org.Hs.egPATH to use with the bitr command from clusterProfiler. My inquiry is this: I am getting the following error afte ...
org.hs.egpath written 15 months ago by ladypurrsia0 • updated 15 months ago by Guangchuang Yu800

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