User: Lucas Schiffer

gravatar for Lucas Schiffer
Reputation:
170
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Trusted
Location:
CUNY School of Public Health, New York, NY
Twitter:
_schifferl
Last seen:
3 weeks, 1 day ago
Joined:
1 year, 5 months ago
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s*************@gmail.com

Posts by Lucas Schiffer

<prev • 18 results • page 1 of 2 • next >
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Answer: A: Subset SummarizedExperiment Objects by Metadata
... Thank you Martin. With the even with subset(V13, select = V13$hmp_body_subsite == "Stool") there is still an error with the coercion but once the method is there then the behavior is as expected. I will add this a pull request against SummarizedExperiment on GitHub. ...
written 27 days ago by Lucas Schiffer170
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Subset SummarizedExperiment Objects by Metadata
... After some searching and reading of old post (https://support.bioconductor.org/p/57524/) I am wondering if there exist a manner in which SummarizedExperiment objects can be subset by metadata with an explicit method beyond [. To illustrate, I have a small example: This is possible with the bracket m ...
summarizedexperiment written 27 days ago by Lucas Schiffer170
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Comment: C: markdown is coming to the support site
... Thank you for finding these issues Aaron! They all seem like pretty reasonable request and I will try and add them along with math support. ...
written 6 months ago by Lucas Schiffer170
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Comment: C: markdown is coming to the support site
... This was a really great question and I think it would be useful for the support site. I will add it using the mathjax library. ...
written 6 months ago by Lucas Schiffer170
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Answer: A: markdown is coming to the support site
... the first syntax highlighted post merged_eset <- function(assay_data, pheno_data, experiment_data) { data.matrix(assay_data) %>% ExpressionSet(., pheno_data, experimentData = experiment_data) } ...
written 6 months ago by Lucas Schiffer170
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Comment: C: markdown is coming to the support site
... You should now be able to write a post using markdown, if not you will need to clear your browser cache so a piece of javascript can be loaded. And as a bonus if you surround R code with ``` the syntax will be highlighted. ...
written 7 months ago by Lucas Schiffer170
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News: markdown is coming to the support site
... I have recently been working with the Bioconductor core team to add markdown capacity to the support site and am glad to let you know that it will appear shortly. I know it had been a wish list item for a long time and I am really excited I had the opportunity to implement it. Just to be clear, it w ...
news markdown written 7 months ago by Lucas Schiffer170
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Comment: C: Problem in merging data frames
... How large are your two data frames and of what class are they (DataFrame, data.frame, data_frame)? A bit more of a workable example will help in answering the question. Also do sessionInfo() from within R so the relevant information about your system is known. dims(l) dims(h) class(l) class(h) ses ...
written 7 months ago by Lucas Schiffer170
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Answer: A: updating bioconductor gives problem with coin
... R has a number of dependencies that are sometimes difficult to satisfy on macOS. If possible, you might consider installing R using homebrew (https://brew.sh/) by first installing homebrew following the instructions on the site and then doing the following from terminal to install R. brew update b ...
written 7 months ago by Lucas Schiffer170
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Comment: C: "quiet" mode for AnnotationHub?
... Additionally, there is another function to remove messages from output: suppressMessages(AnnotationHub()[["AH134"]]) ...
written 13 months ago by Lucas Schiffer170

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Teacher 17 months ago, created an answer with at least 3 up-votes. For A: ExperimentHub()[["EH359"]] has character expression values

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