User: arisarkar88

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Posts by arisarkar88

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Comment: C: Agilent microrna microaaray
... I am well aware that the reply should be posted in 'ADD COMMENT' instead of 'ADD ANSWER' which I have followed through all my previous posts. Unfortunately, this time I was working on a desktop which suddenly had some problem and the reply was posted in 'ADD ANSWER' instead of  'ADD COMMENT'. I trie ...
written 22 months ago by arisarkar880
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Answer: A: Agilent microrna microaaray
... Sorry..I should have posted the exact error. This was really non-specific. Thank you for pointing out this. The error was: In read.table(file = file, header = header, sep = sep, quote = quote, : incomplete final line found by readTableHeader on ... I was using readTargets to read the array fil ...
written 22 months ago by arisarkar880
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Agilent microrna microaaray
... Hello,           How to analyze data corresponding to Agilent-019118 Human miRNA Microarray 2.0 G4470B? I am bit stuck with this. ...
microrna analysis agilent microarrays written 23 months ago by arisarkar880
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Analyzing "Hitachi human oligo chip-drug responsive genes" platform data
... How to analyze microarray data corresponding to the platform "Hitachi human oligo chip-drug responsive genes" in R?  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL7220 ...
microarray analysis written 2.1 years ago by arisarkar880
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Comment: C: Analyzing Agilent custom array in R
... Thank you for the reply. It was really helpful. I checked the user guide for limma. Therein Quantile normalization has been used. Is it possible to use '75th percentile/upper quartile' normalization using limma? ...
written 2.1 years ago by arisarkar880
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Analyzing Agilent custom array in R
... How to analyze datasets corresponding to 'Agilent-016332 Human Gene Expression 8X15k (AMADID: 16332)' in R? ...
agilent microarrays analyze written 2.1 years ago by arisarkar880 • updated 2.1 years ago by James W. MacDonald50k
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Comment: C: Normalizing Affymetrix Multispecies miRNA-1 and miRNA-2 array simultaneously
... Thank you for the reply. Will it be correct if I normalize them individually and then scoop out the common miRNAs between them and then proceed to differential regulation analysis? ...
written 2.1 years ago by arisarkar880
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Normalizing Affymetrix Multispecies miRNA-1 and miRNA-2 array simultaneously
... How can I normalize datasets from [miRNA-1] Affymetrix Multispecies miRNA-1 Array and [miRNA-2] Affymetrix Multispecies miRNA-2 Array simultaneously? ...
normalization mirna array written 2.1 years ago by arisarkar880 • updated 2.1 years ago by James W. MacDonald50k
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Comment: C: fRMA normalization for Mouse Gene 2.1 ST Array
... Thank you..but I am a novice in R. Can you please help me regarding how to create frma vector for this case?  ...
written 2.1 years ago by arisarkar880
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fRMA normalization for Mouse Gene 2.1 ST Array
... Hello,           Can anyone help me with fRMA? I need to execute fRMA for "Affymetrix Mouse Gene 2.1 ST Array [transcript (gene) version]? ...
frma affymetrix mouse gene arrays written 2.2 years ago by arisarkar880 • updated 2.1 years ago by Matthew McCall830

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Popular Question 11 months ago, created a question with more than 1,000 views. For Analyzing Agilent custom array in R
Popular Question 11 months ago, created a question with more than 1,000 views. For illumina ht-12 v4 expression beadchip

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