User: d.depledge

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d.depledge0
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Posts by d.depledge

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Comment: C: Differential Expression analysis between distinct scRNA-seq datasets
... Thanks for the comments - I've been looking at MAST and I think this might well suit my requirements.. Your point about cluster labels being data-driven is well taken and I will have to think carefully about interpretation. As for a confounded design, it is more the case of a poorly written descri ...
written 17 days ago by d.depledge0
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Differential Expression analysis between distinct scRNA-seq datasets
... I have two scRNA-seq datasets, both derived from a heterogeneous population of cells (comprising similar numbers of cell types and subpopulations). One sample has been treated with a drug, the other has not. While I can separate out the cellular subpopulations in each dataset, what I want is to then ...
differential gene expression scrna scrnaseq written 17 days ago by d.depledge0 • updated 17 days ago by davide risso490
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Gviz Alignments Track - RNASeq data
... I'm using GViz to visualize RNASeq data using AlignmentsTrack. I have lots of reads that are spliced across two or more exons (this is long read RNASeq data). However, I am getting an error when providing a character vector of CIGAR values associated with the alignment. "Error in .fillWithDefaults( ...
gviz written 14 months ago by d.depledge0

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