User: xluong

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xluong0
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Posts by xluong

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edgeR: experiments with multiple factors comparisons
... Hello, I am trying to perform DE gene analysis on RNA-Seq data. My groups consist of animals from two different populations (SD v. XE) and two different treatments (CON v. E2). I'm following section 3.3.1 in the edgeR user guide. My metadata is as follows:    samples treat pop  group 1   THXL1A   ...
limma multiple factor design multiple comparisons written 3.0 years ago by xluong0 • updated 3.0 years ago by Gordon Smyth38k
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edgeR: Nested interactions model matrix MISSING COEFFICIENTS
... Hello, I am trying to perform DE gene analysis on RNA-Seq data. My groups consist of animals from two different populations (SD v. XE) and two different treatments (CON v. E2). I'm trying to look at nested interactions and am following section 3.3.2 in the edgeR user guide. My metadata 'meta' is a ...
limma edger nested design written 3.1 years ago by xluong0 • updated 3.1 years ago by Ryan C. Thompson7.4k

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