User: eric.blanc

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eric.blanc0
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Posts by eric.blanc

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biomaRt::getBM fails with "Error in scan"
... Hi, I'm using `biomaRt` to extract from ENSEMBL amino-acid sequences together with the APPRIS transcript status. I am using the `getBM` function, as I couldn't find a way to add the APPRIS status using `getSequence`. However, I get an error when I request (beside the sequence) both the SwissProt ID ...
biomart written 10 weeks ago by eric.blanc0 • updated 10 weeks ago by Mike Smith3.6k
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Comment: C: deseq2 DESeqDataSet size when saved
... Thanks Michael, and sorry I wasn't able to find the relevant thread...   ...
written 7 months ago by eric.blanc0
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deseq2 DESeqDataSet size when saved
... Hi, I am trying to generate small files to include in my package for regression tests. One of them is a small DESeqDataSet object (object dds_small below, the first 50 features from a complete analysis store in object dds). However, when I save the small object, its size remains very large: > ...
infrastructure deseq2 importing deseqdataset written 7 months ago by eric.blanc0 • updated 7 months ago by Michael Love23k

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