User: adam.cribbs

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adam.cribbs10
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Posts by adam.cribbs

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Answer: A: Reason: image not found Error: package GenomeInfoDb could not be loaded
... I used conda exclusively on a clean environment. I will try conda create --name deseq2 bioconductor-deseq2 gcc as suggested by the linked issue. ...
written 9 weeks ago by adam.cribbs10
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Reason: image not found Error: package GenomeInfoDb could not be loaded
... No sure if this is the best place to ask this question or if its a conda related issue. However, after installing a conda environment and then installing the bioconda-deseq2 package, I am profiling some code on a mac (runs ok on linux) and I am getting issues with shared objects:   > library(D ...
deseq2 conda written 9 weeks ago by adam.cribbs10
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Comment: A: Unusual skewed MA plot at lower expression
... Thanks for the comments. I re-analysed the data without the beta prior and have the following MA plot: The summary stats for read depth are as follows: Disease: Min. 1st Qu. Median Mean 3rd Qu. Max. 18.16 18.98 21.58 21.32 23.47 24.37 Healthy: Min. 1st Qu. Median Mean ...
written 2.2 years ago by adam.cribbs10
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Unusual skewed MA plot at lower expression
... Hello, I have RNA seq data (paired end) isolated from exosomes from healthy and disease and have performed diff express using DESeq2. However, I have unusual skweing in my MA plot. I have not come accorss this before in any of my other experiments (or in the microvesicles from the same donors). The ...
normalization deseq2 written 2.2 years ago by adam.cribbs10

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